Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01454 ATGCTTTTTTCTTTTTTATGTCTTTACTCCTTGTTACTCAAAACAACTTCCTTGTTCCTAGTACAGTACTATTCTTTTCAGCACAAAGATTGGAAGACCATAACGTGCGCCACTGGGACCGTTAATATTCGACTCGTCTCTCTAACTAACAACATGGACAATGGTTGCTTCTCTTCTCCACGCCACGATGCTTTTCCAGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGCTTATATGAAGTGACTACATGTTGTTTAGCAACAGAGGCCCTGAAAAAACTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAACTTCTGGAGCAAGTTGGACTTGAGATGGATCTTCCTGTTATCATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAACATGTCTTTAGAAAAAGGATGCATGAGGCAAGAGATTTTGAAAGTCACGAGGGTTTTGACTTTGAGGGCATTCACTTAATGAGAAATGGATCAGATCACTCTGATGATGGTAACCTGTTTGCTGTAGAAGAAATTACCTCAATTAAGAAAAGAAAAGATGCAGATAACAAACATGATGACAAAGAATTTGGAGATCATTCTCCCATGAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATCTGATGAATGTTCCGTGGTTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAGAATGATCAGAAATCTTCCTCAAGTGGAATAAAGCATTCGGATTCACCTTCAAAAGATCCAGGAAGTTTTAGTATTCTAGACACTGCAAACAAGCAACAAAATGATGTTGCCATTGACAGCTTCAGTTATTCAGATGGAAGTTTACTACTTCAGATGGATGCCACTAGTCATGAAGGTAATCTCAAGGGAATTGTGTCAGAGCCTACAACAGAAAAAAGAAGAGGTTCCACTGGTGACATTCCTGACCCCAAGATACAAAAAAGTTCACAGAAGAGCCTCAATCAACCTTTTACATCTGTAGAGTCATCAGAAGCAAACCATGCAGTCTTTGATTGCACCATACCAACACAGTACTCTTGGAGTGAGTTTCCAAAAGGGCCACTCAAAGAAGAACAGAAGACACTTGTTCAATTAGAGGATAGCCTCAGCCAGTTGCCATTGCATGGTAATGGTACACAGCATCACATTCACGTTGATCAGTCACAATCAATTGCCTCAATTAATTCCAATCCCTCTATAACAGAAGAAGAGGTTGCTGCCAAATTAGAGACCAAACCGTTGTATGCTGGTTACGAGAGTGATTATGTGAGTCCTGTGAGTTCAATAGGATCTGCAGTTGAAGTCTTTCCTAGTCAATCCAAAAGCCTTATGGTGAATGATCAATCTTCAGAGCCCACTTTCACCTCAAACTTGAGCTTGAAGGCTCAGGGATTTAATCGAGATTGCATTTCTGATCTGGATTTTTACCAAAGAAACCTATTATTGGGTGGTGAGAATATAGATATGTCAGAGTATTATGATCCAAGGCTTATTGCTGAAGTCCCTAGCCACTTTTATGATTCAGCAGATTATTCATCAGTAGATCAAAGTCTATTCATAGCATGA 1827 0.3979 MLFSFLCLYSLLLKTTSLFLVQYYSFQHKDWKTITCATGTVNIRLVSLTNNMDNGCFSSPRHDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFDFEGIHLMRNGSDHSDDGNLFAVEEITSIKKRKDADNKHDDKEFGDHSPMKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDSPSKDPGSFSILDTANKQQNDVAIDSFSYSDGSLLLQMDATSHEGNLKGIVSEPTTEKRRGSTGDIPDPKIQKSSQKSLNQPFTSVESSEANHAVFDCTIPTQYSWSEFPKGPLKEEQKTLVQLEDSLSQLPLHGNGTQHHIHVDQSQSIASINSNPSITEEEVAAKLETKPLYAGYESDYVSPVSSIGSAVEVFPSQSKSLMVNDQSSEPTFTSNLSLKAQGFNRDCISDLDFYQRNLLLGGENIDMSEYYDPRLIAEVPSHFYDSADYSSVDQSLFIA 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01454 608 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 253 306 IPR006447 GO:0003677
Gma05g01454 608 PANTHER TWO-COMPONENT RESPONSE REGULATOR 41 572 IPR045279 GO:0009736
Gma05g01454 608 Pfam Response regulator receiver domain 71 180 IPR001789 GO:0000160
Gma05g01454 608 MobiDBLite consensus disorder prediction 396 414 - -
Gma05g01454 608 ProSiteProfiles Response regulatory domain profile. 70 185 IPR001789 GO:0000160
Gma05g01454 608 PANTHER TWO-COMPONENT RESPONSE REGULATOR 41 572 - -
Gma05g01454 608 CDD REC_typeB_ARR-like 71 185 - -
Gma05g01454 608 Pfam Myb-like DNA-binding domain 255 305 IPR001005 -
Gma05g01454 608 MobiDBLite consensus disorder prediction 373 414 - -
Gma05g01454 608 Gene3D - 251 312 - -
Gma05g01454 608 Gene3D - 69 233 - -
Gma05g01454 608 MobiDBLite consensus disorder prediction 315 340 - -
Gma05g01454 608 SUPERFAMILY Homeodomain-like 251 310 IPR009057 -
Gma05g01454 608 SUPERFAMILY CheY-like 68 193 IPR011006 -
Gma05g01454 608 SMART REC_2 69 181 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01454 Gma-Chr5 36378344 36383105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01454 63 319 Response Regulator Gene Family AT2G25180 54.545 1.69e-82 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma05g01454 Response_reg 1.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01454 - K14491 gmx:100778324 1104.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01454 05 36378344 36383105 Gma08g00937 08 7901978 7906260 GST
Gma18g00099 18 777617 781581 Gma05g01454 05 36378344 36383105 PCT
Gma11g02479 11 40051924 40055959 Gma05g01454 05 36378344 36383105 PCT
Gma05g01454 05 36378344 36383105 Gma18g00099 18 777617 781581 PCT
Gma05g01454 05 36378344 36383105 Gma11g02479 11 40051924 40055959 PCT