Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01429 ATGGAGGAGGAGGATGAGATTCAAGCACAGAAGGTGAGAAGAAGAAGAGGCAGTGATGGAGAGAGCACGAACAGGTTCCACAGCAGCTGGCACCACCACCACCACCACTCTTCGAGGATCATAAGGGTGTCTCGTGCATCTGGTGGCAAAGACAGGCACAGCAAAGTGATGACTTCAAAAGGGTTGAGAGATAGAAGGGTTAGGCTTTCCGTGACCACTGCCATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTATGACCAACCTAGTAAAGCTGTGGAATGGCTTATCAAATCTGCTTCTGATTCCATTTCTGAACTTCCTTCTTTGAACAATTTCCCTGACACCCCCAAAAGTGATGATCATGAGAAGAGAGCAAACACTGATGTTGCTGCTGGGGCAGTAGATGGTGAGAATTATGAAAATGAGAATGGCAATAACAATAACCAGAGTCAGAACATGTCTTTGTCTAAATCTGGTTGTAGTAGCACTTCTGAGACAAGCAAAGGTTCTGGCTTGTCCCTCTCAAGGTCTGATATTCGTGTGAAGGCTAGAGAGAGGGCAAGGGAGAGAACAACAAAGGAAAAGGAGAAAGAGAAAAATGAGTCtcatcatcatcacagcaatgttgttgttcctcatcatcgtcatcatcatcatcataaccccgttTCACAAACAGCTTCTTTCACTGAGCTTCTCACTGGTGGGATTCCCAAAGGGTGTGATGATGAGGAGCCTAATAACATGATGATGTtcaacaaagaagctgcagcagcatcatctggtagacagcaatggtgttcatcatcatcagcagcagcagcagcaCCTATGGACTACTTTCTGGGGCCTTCCTCTTCTAGAACAACAACAACACCACCACACAATCACCATCACCATCATCATCAATATTCTTCTTCTGGTGGGTTCTCATTGGCACAAATCCAACTAGGACATTCTCTTCCTGAGGCAATGAATCACAATGTTTCAGCATTCAACAATAATGTGAGTGGTGAGAACCAAAACCACTCATCATCAGATCCTCATCTGCAACAGCAGCAACACTTCTCATTCATACCGGATCATCTTATGTCAGCTGTGGTTACTTCTTCTTCTCATCATCAACCTAGCGGGAGCGACTACAATCTGAACTTCACCATGTCTTCGGGCCTCGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTTTTGCCTCACTTGCAGAGGTTTTCGCCTCTAGACGGATCCACTGTACCTTTCTTCATTGGAGCTGCTCCTTCTGCTGCAGTTGCTGCTCCTGCCATGGAGAACAACACCACCACCACCAACAACCATCACCACCATCAGTTCTCATCTGGTTTCGATGGCAGCCGCTTGCAACTCTACTATGGGCATTCTGACCAGAAGGGGAAAGCCAAAAACTGA 1437 0.4196 MEEEDEIQAQKVRRRRGSDGESTNRFHSSWHHHHHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDSISELPSLNNFPDTPKSDDHEKRANTDVAAGAVDGENYENENGNNNNQSQNMSLSKSGCSSTSETSKGSGLSLSRSDIRVKARERARERTTKEKEKEKNESHHHHSNVVVPHHRHHHHHNPVSQTASFTELLTGGIPKGCDDEEPNNMMMFNKEAAAASSGRQQWCSSSSAAAAAPMDYFLGPSSSRTTTTPPHNHHHHHHQYSSSGGFSLAQIQLGHSLPEAMNHNVSAFNNNVSGENQNHSSSDPHLQQQQHFSFIPDHLMSAVVTSSSHHQPSGSDYNLNFTMSSGLAGYNRGTLQSNSPSLLPHLQRFSPLDGSTVPFFIGAAPSAAVAAPAMENNTTTTNNHHHHQFSSGFDGSRLQLYYGHSDQKGKAKN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01429 478 Pfam TCP family transcription factor 48 198 IPR017887 -
Gma05g01429 478 ProSiteProfiles R domain profile. 178 196 IPR017888 -
Gma05g01429 478 MobiDBLite consensus disorder prediction 332 352 - -
Gma05g01429 478 Coils Coil 182 202 - -
Gma05g01429 478 PANTHER TRANSCRIPTION FACTOR TCP24 9 478 - -
Gma05g01429 478 MobiDBLite consensus disorder prediction 134 206 - -
Gma05g01429 478 Coils Coil 476 478 - -
Gma05g01429 478 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Gma05g01429 478 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 478 IPR005333 GO:0003700
Gma05g01429 478 MobiDBLite consensus disorder prediction 1 27 - -
Gma05g01429 478 MobiDBLite consensus disorder prediction 1 54 - -
Gma05g01429 478 MobiDBLite consensus disorder prediction 140 175 - -
Gma05g01429 478 MobiDBLite consensus disorder prediction 179 206 - -
Gma05g01429 478 MobiDBLite consensus disorder prediction 285 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01429 Gma-Chr5 36066984 36073587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01429 21 478 TCP Transcription Factor Family AT4G18390 40.619 4.40e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma05g01429 TCP 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01429 - - gmx:100816799 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01429 05 36066984 36073587 Gma05g01429 05 36066984 36073587 ECH