Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01417 ATGAAGAGAGAGCGCCAGCAGCTTGGTTCCAACGCAGGAACCTCAAGCTGCGGTTATTCAAGCGGAAAATCGAATCTTTGGGAGGAAGAAGGAGGCATGGACGAGCTTCTTGCAGTGGTGGGTTACAAGGTGAGGTCATCGGACATGGCGGAAGTGGCGCAGAAGCTGGAGCGTCTTGAGGAAGCCATGGGAAATGTCCAAGATGACCTCACGGACCTTTCAAACGACGCCGTTCATTACAACCCTTCCGACATCTCCAACTGGCTCCAAACCATGCTTTCCAATTTTGACCCTCTCCCCTCCGAGGAGCCCGAGAAGGACTCCGCCTCGTCGGACTACGATCTCAAGGCTATTCCGGGGAAAGCAATCTATGGAGGTGGTAGTGACGCGCTACCAAACCCTAAGCGCGTGAGAACCGACGAGTCAACGCGCGCGGTGGTGGTCGTTGACTTGCAGGAGAACGGGATCCGCCTCGTGCACAGCCTCATGGCGTGCGCGGAGGCGGTGGAGAACAACAACCTCGCCGTGGCGGAGGCGCTGGTGAAACAGATCGGCTTCCTCGCCTTGTCACAGGTCGGAGCTATGAGGAAAGTCGCAACCTACTTCGCCGAAGCGCTCGCGAGGCGAATCTACAGAGTCTTCCCTCAGCAGCACTCCCTCTCGGATTCTCTACAGATTCACTTCTACGAAACTTGTCCTTACCTTAAGTTCGCGCACTTCACCGCAAACCAGGCGATTCTCGAAGCGTTTCAAGGGAAAAATCGCGTTCACGTGATTGATTTCGGAATCAACCAGGGGATGCAGTGGCCGGCACTGATGCAAGCCCTTGCGCTTCGCAACGACGGCCCTCCGGTTTTCCGGCTAACCGGAATCGGACCGCCGGCGGCGGACAACTCCGACCACCTCCAGGAGGTAGGGTGGAAGCTCGCGCAGCTGGCGGAGAGGATCCACGTGCAGTTCGAGTACCGCGGCTTCGTCGCAAACAGCCTCGCCGATCTCGACGCCTCCATGCTGGATCTCCGAGAAGACGAGTCCGTGGCGGTGAACTCCGTCTTCGAGTTTCACAAGCTCCTCGCCCGCCCCGGCGCGGTGGAGAAAGTCCTCTCCGTCGTTCGGCAGATTCGGCCTGAGATCCTCACCGTCGTCGAGCAAGAAGCGAACCACAACGGACTGAGTTTTGTCGACCGGTTCACCGAGTCACTGCACTATTATTCAACTCTATTCGACTCGCTGGAGGGTTCGCCTGTGAACccgaacgacaaggccatgtcggaggtttacttagggaagcaaatctgcaacgtggtggcgtgcgagggaatggaccgcgtggaaaggcacgagacgctgaaccagtggcggaaccggttcggttcgaccgggttttctccggttcacttgggttcgaacgcgtacaagcaggccagcatgttgctatcgcttttcgggggtggggatgggTATAGAGTGGAAGAGAACAATGGGTGTCTCATGTTGGGATGGCACACTAGGCCCTTGATTGCCACCTCCGTGTGGCAACTCGCTACAAAATCGGTGGTTGCTGCTCACTGA 1572 0.4962 MKRERQQLGSNAGTSSCGYSSGKSNLWEEEGGMDELLAVVGYKVRSSDMAEVAQKLERLEEAMGNVQDDLTDLSNDAVHYNPSDISNWLQTMLSNFDPLPSEEPEKDSASSDYDLKAIPGKAIYGGGSDALPNPKRVRTDESTRAVVVVDLQENGIRLVHSLMACAEAVENNNLAVAEALVKQIGFLALSQVGAMRKVATYFAEALARRIYRVFPQQHSLSDSLQIHFYETCPYLKFAHFTANQAILEAFQGKNRVHVIDFGINQGMQWPALMQALALRNDGPPVFRLTGIGPPAADNSDHLQEVGWKLAQLAERIHVQFEYRGFVANSLADLDASMLDLREDESVAVNSVFEFHKLLARPGAVEKVLSVVRQIRPEILTVVEQEANHNGLSFVDRFTESLHYYSTLFDSLEGSPVNPNDKAMSEVYLGKQICNVVACEGMDRVERHETLNQWRNRFGSTGFSPVHLGSNAYKQASMLLSLFGGGDGYRVEENNGCLMLGWHTRPLIATSVWQLATKSVVAAH 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01417 523 Pfam Transcriptional regulator DELLA protein N terminal 34 100 IPR021914 -
Gma05g01417 523 MobiDBLite consensus disorder prediction 1 25 - -
Gma05g01417 523 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Gma05g01417 523 ProSiteProfiles GRAS family profile. 149 513 IPR005202 -
Gma05g01417 523 Pfam GRAS domain family 158 513 IPR005202 -
Gma05g01417 523 Gene3D - 32 96 IPR038088 -
Gma05g01417 523 PANTHER DELLA PROTEIN GAI1-RELATED 2 130 IPR030006 GO:0003712|GO:0005634
Gma05g01417 523 PANTHER DELLA PROTEIN GAI1-RELATED 147 514 IPR030006 GO:0003712|GO:0005634
Gma05g01417 523 SMART DELLA_2 34 106 - -
Gma05g01417 523 MobiDBLite consensus disorder prediction 7 23 - -
Gma05g01417 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 130 IPR005202 -
Gma05g01417 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 147 514 IPR005202 -
Gma05g01417 523 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01417 Gma-Chr5 35852473 35854728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01417 28 516 GRAS Transcription Factor Family AT1G14920 69.866 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma05g01417 GRAS 3.8e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01417 K14494 - gmx:547718 1023.46