Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01402 ATGATTGGAAGTAAAGATCGTGTTGTTGACTCTGAAGGTGAAAACTCCAGGAGCAAGCTCTCAAGGCACAATTTTGAGGCCAACAAGGAGTACCCAGATGAAAAAGGTGTTGAATTTCTGAGAGATTCAAAAGTGGGTGGTGGTGGTGTTGATGGGGTTTTTCACTCAAAACCcaccaaggttgttgttgttggtggtggtggtggcagcagctCAGGGTTTCAAGAGTTGACCCTCAGCTACCTTTGTGATAACCCAAAATTCAATCTTGCTGAGAAAGAGATTCCTGGTAAAAGCCTGCTGAATTCCTTGGAAAAAATGAGCCACAAAGGGAAAGAGGTTGTGATCTGTGAGAATTCAAATCAAGATGGGAAATGGGTGGAAAGAGATTTTCTCAGCCTGAGTGAGCCAAGGGAAGATTCTTCAAAGCGATCCCTTGAGGAAGTTGTTGAGAGGGAGAGTAATAGGGAGAAGAAGCCAAAACTGGAGACACTTAACCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCCCTCACTGCCTCAAACGCCTTGCAAAACGGTGATCAACAACAACCAATTAGGACCAAACCTTGCAGGCCATCCACTACTACTCACACTTCATATTCCAATGACTACACTGCAGCTTCTTTGTCTTACTCTTATTCCCACCCTTTCTCTCACAATCCAAGCTGTTCACTCACCCGCAATTCAACTGATAATTTTGATTACTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGGACTAATGGCTCTGTGCATAGTAGGTTCAAGCCAATTGGAGATGGGTTGGTTGGTTTATCCAACCATGGTGGTGCTGCTGGTGGTATTAGTTCCTTTATGCAAGGTAATAATAGTCAGTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAGTTGCCTGCAAGGTCAAGGTTTGAGGCTCAGTCAGGGGACTCAAGGGGGAGGAATTCTAAGAATCTGAGAATCTTGGAAGGCTTGGATGATGGGAAGGTAAGGAAGATTTCTAGGCCAGAGAGAATTGTTAGGGAAATTGTTTCAGAGTCTATACCTGTCATGGCATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTGAGGAATCTCATTGAGAAGCCCGAGAAGAAAGAGGAACTGGTAAGCCTCCAGAACCGGCTCGAGAGAAGATCTGACCTTACTAAGGAGAGTCTTTCAAAGTGCCATAAAGTGCAATTAGAGGTTTTAGTGGCTGTCAAGATGGGGCTTGCTAGCTTCCTATCTAATAAAATTCAATTGTCTGAGATGGTAGAGGTTTTCTTGTTTAAGAGGTGTAGGAATGTAACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGAAACAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTACTTGTGGTATTCAGAAGAATCTTATCAAGCCTGGGCCTAGCTTGAAGGGGCCTTCAGGGACCTCAGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCGGAAATGTTTGGTTTTGTTAAGGACGTGTTTGTGTGTTGTGCTAAGGATTGGGGTCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAAGATCTTCAGGGGAAGTGAAGATTGCAAAGGGAAGGAATTGCATGTTAAGACTGATGACATGCTATTAAAGCTTCAAACTAAAATGATATCTCCTTTGGATGCCTGCAATTACATCATGCAGTTCTTCAGCTATGCAGACAGCATGTCAGACTTTCATACTTCTGGTATTTCTTCAAAGGATTTGCCAGCCTCTCAATCTAACCTTACAAAGGATACACCATCTCTTTCAAAACCTAATTCTCTATTACCAGAATATGGTTATGACATGGGCTATTCTAGGTCACATCCTGATGCCATGTCAAGTGATCTACTTCAGAAAGACCTCAAAGCTTCCATCTTAAGTGAACTGAAAAATGAGGCTGATTTCCATTTGGGGGCTTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACGAAGACTGCGCAGATGGAAGAAGAGTACGCCGAAAAGCTTTCCAAACTCTGCTTGCATGAGACCGAGGAAACGCAGAGGAAGAAATTGGATGAACTGAAAGTCTTGGAAAATTCCTATTTTGATTACTATAAAATGAAAAAGAGAATGCAAGATGAGATTGATGGTTTATTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA 2454 0.4193 MIGSKDRVVDSEGENSRSKLSRHNFEANKEYPDEKGVEFLRDSKVGGGGVDGVFHSKPTKVVVVGGGGGSSSGFQELTLSYLCDNPKFNLAEKEIPGKSLLNSLEKMSHKGKEVVICENSNQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNREKKPKLETLNLSLALPDVSLSLTASNALQNGDQQQPIRTKPCRPSTTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGLVGLSNHGGAAGGISSFMQGNNSQYKTTSSDNHSFFPSELPARSRFEAQSGDSRGRNSKNLRILEGLDDGKVRKISRPERIVREIVSESIPVMALTIQELTDDVIASTKEYLRNLIEKPEKKEELVSLQNRLERRSDLTKESLSKCHKVQLEVLVAVKMGLASFLSNKIQLSEMVEVFLFKRCRNVTCKHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGIQKNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFVCCAKDWGLETLMKELDCVRKIFRGSEDCKGKELHVKTDDMLLKLQTKMISPLDACNYIMQFFSYADSMSDFHTSGISSKDLPASQSNLTKDTPSLSKPNSLLPEYGYDMGYSRSHPDAMSSDLLQKDLKASILSELKNEADFHLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHETEETQRKKLDELKVLENSYFDYYKMKKRMQDEIDGLLRRMEATKQQWV 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01402 817 Coils Coil 795 815 - -
Gma05g01402 817 MobiDBLite consensus disorder prediction 183 209 - -
Gma05g01402 817 CDD PHD_OBE1_like 485 544 - -
Gma05g01402 817 Coils Coil 719 753 - -
Gma05g01402 817 Coils Coil 767 787 - -
Gma05g01402 817 Pfam Coiled-coil region of Oberon 678 806 IPR032535 -
Gma05g01402 817 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 817 IPR004082 -
Gma05g01402 817 PANTHER PROTEIN OBERON 3 1 817 - -
Gma05g01402 817 MobiDBLite consensus disorder prediction 1 27 - -
Gma05g01402 817 Pfam PHD - plant homeodomain finger protein 455 579 IPR032881 -
Gma05g01402 817 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 368 390 IPR004082 -
Gma05g01402 817 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 407 422 IPR004082 -
Gma05g01402 817 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 446 467 IPR004082 -
Gma05g01402 817 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 492 512 IPR004082 -
Gma05g01402 817 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 565 584 IPR004082 -
Gma05g01402 817 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 713 733 IPR004082 -
Gma05g01402 817 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 752 774 IPR004082 -
Gma05g01402 817 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01402 Gma-Chr5 35663157 35667681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01402 455 642 PHD Gene Family AT5G57380 23.936 1.48e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01402 - - gmx:100820216 1627.07