Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01382 ATGTTAGACAACAACAACAGTGCTTCTAATTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAATGGGGTGGCTAACAACAAAAGGAAAAGAAGACCAGCAGGCACACCCGATCCAGATGCCGAGGTTGTGTCTCTCTCACCAACCACCTTGCTGGAATCTGACAGATATGTTTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGGAGGCACAAGGTGCCATGGAAGCTGCTAAAGAGGGAAACAGCACAAGGGCAGAATAAGAAGAGGGTGTTTGTGTGCCCTGAGCCAAGCTGCTTGCACCATGACCCTTGCCATGCCCTTGGGGACCTTGTGGGAATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTGTGTGACAAGTGCTCCAAAGGGTATGCTGTTCAATCTGATTACAAGGCTCACATCAAAACCTGTGGCACCAGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCATCGCCCAGAGTTGCAAGCACTTCAAGCAGCATGCTCTTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCAGTACTGCCAAAACCAGCTGAACAACCAGCAACAGCAGTCTTATTAATGTCAGAGATACACAATAACAAGTCCACCACCTCGCATAACTTAGAACTTCAGCTCTTGCCCTCCTCAATAAATTCTCAAGAAAAACATAATCCAAAGGAAAACTATGGCTTGAAACTTTCAATAGGCTCATGTAGAAACGACACAGGGAATAATGAACCAGCAGAGAGAGCATGTTCAGAAGCACATAGGAGCCCACCAGAAAGGAATAATAATAATGTGAGTGACTATTCCACATTGGAAGTGGCAAGGTTGAAGGAGTTTGCAGGAGAGGAGCTTAAGTTGGCCATGGCAGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAGGCCAAACGCCAAATTGAGATAGCTGAACATGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAACTTGCAAAGGCTGAAGAGCTGAGAAAGCAGGCCATCAAGAAGATAAGTTCCACTGTTAAGGAAATAACATGCCACACTTGCAAGCAACAGTTTCAGTCTTCAATTGTTGGGGTTCCATCATCAGAAGAAACCTCCATTGTGATGAGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA 1323 0.4664 MLDNNNSASNSGAPSSSDAAFALSENGVANNKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETAQGQNKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQAACSSRTASSASPSSEANFSIAPPLQGLPVLPKPAEQPATAVLLMSEIHNNKSTTSHNLELQLLPSSINSQEKHNPKENYGLKLSIGSCRNDTGNNEPAERACSEAHRSPPERNNNNVSDYSTLEVARLKEFAGEELKLAMAEKAYAEEARREAKRQIEIAEHEFENAKRIRKQAQAELAKAEELRKQAIKKISSTVKEITCHTCKQQFQSSIVGVPSSEETSIVMSYMSSATTEGEAE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01382 440 MobiDBLite consensus disorder prediction 1 24 - -
Gma05g01382 440 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Gma05g01382 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Gma05g01382 440 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 440 - -
Gma05g01382 440 Gene3D Classic Zinc Finger 39 106 - -
Gma05g01382 440 Gene3D Classic Zinc Finger 125 203 - -
Gma05g01382 440 SMART c2h2final6 61 83 IPR013087 -
Gma05g01382 440 SMART c2h2final6 140 167 IPR013087 -
Gma05g01382 440 SMART c2h2final6 104 134 IPR013087 -
Gma05g01382 440 PANTHER OS03G0310200 PROTEIN 1 440 IPR039288 GO:0009630
Gma05g01382 440 Coils Coil 338 400 - -
Gma05g01382 440 MobiDBLite consensus disorder prediction 1 50 - -
Gma05g01382 440 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Gma05g01382 440 SUPERFAMILY beta-beta-alpha zinc fingers 60 160 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01382 Gma-Chr5 35491308 35493714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01382 25 440 C2H2 Transcription Factor Family AT2G01940 57.078 1.73e-155 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma05g01382 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01382 K25871 - gmx:100806138 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01382 05 35491308 35493714 Gma08g00865 08 7131205 7134247 GST