Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01349 ATGGCTGAAACTCCCTCTCCCTCTCTCTCTCAGTCTCCCTCACCCCCCTTTGGCCCCATCATAAGTGATGGCCAAGTTGGTGGATTCGATTGGATGGTCCTTTTGGCAGCAATTTTATGTGCCTTTGTGTGTGCTCTTGGCCTCAACACAATGTTACAATGTGCTTGTCGTGTCTTCACAGAGCCTCGCCAATGGATTGCTTCACGCAGGCTCAACTCTGGCCTCAAGAGAAAGGAAATGGTGGCTTTGCCAACCTCAACTTACACTACACACTCTTCTGCTGCCTCTTCTCCATCTTCTTCACCTAATTCTAGTACTTGTGTCATTTGCTTGGCTGAGTTCTCTGATGGGGACCCTATAAGGTTCCTTCCAAAGTGCAATCACTATTTCCATGTGGTTTGCATTGACAAGTGGCTACTCTCTCACTCTTCTTGCCCTACTTGCAGGCACCTCCTCAAGTCAAATGATTCTCTTCACTCCTTACAGTAG 489 0.4785 MAETPSPSLSQSPSPPFGPIISDGQVGGFDWMVLLAAILCAFVCALGLNTMLQCACRVFTEPRQWIASRRLNSGLKRKEMVALPTSTYTTHSSAASSPSSSPNSSTCVICLAEFSDGDPIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRHLLKSNDSLHSLQ 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01349 162 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Gma05g01349 162 PANTHER OS06G0666500 PROTEIN 26 158 - -
Gma05g01349 162 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 26 158 - -
Gma05g01349 162 SUPERFAMILY RING/U-box 106 155 - -
Gma05g01349 162 Pfam Ring finger domain 106 149 IPR001841 -
Gma05g01349 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 154 IPR013083 -
Gma05g01349 162 SMART ring_2 107 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01349 Gma-Chr5 35173404 35173892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01349 30 152 C3H Transcription Factor Family AT2G17450 46.774 2.33e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01349 - K19040 gmx:100799215 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01349 05 35173404 35173892 Gma08g00826 08 6808513 6809019 GST