Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01308 ATGAAAGGGAGAAACACCAAGAGAAAACAAAAGCGAAAGATTAAGAAAATTGAGGATAAAAAAGATCTTCAAATTACTTTGGCAAAGAGAAAATATGGCATTTACAAGAAAGGTAGTGAGTTAACAACTCTTTGTGGGGCAAAAATTCATATGCTTTTGTTTACTTCATTAGGAAAGTGGTTGGGTTACGAGGAACCTTCTCACCAAGCAATGACCAAGTCTAACGATGAAGAAAATCCTACAAAAGATGGTATTGATGAGCTTGTGGAGGATCACACCAAATCAGAGATTGATGAACTTTGA 303 0.3564 MKGRNTKRKQKRKIKKIEDKKDLQITLAKRKYGIYKKGSELTTLCGAKIHMLLFTSLGKWLGYEEPSHQAMTKSNDEENPTKDGIDELVEDHTKSEIDEL 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01308 100 Gene3D - 19 98 IPR036879 GO:0003677|GO:0046983
Gma05g01308 100 SUPERFAMILY SRF-like 8 74 IPR036879 GO:0003677|GO:0046983
Gma05g01308 100 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Gma05g01308 100 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Gma05g01308 100 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Gma05g01308 100 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Gma05g01308 100 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 59 IPR002100 GO:0003677|GO:0046983
Gma05g01308 100 PANTHER MADS BOX PROTEIN 9 74 - -
Gma05g01308 100 PANTHER AGAMOUS-LIKE 57 9 74 - -
Gma05g01308 100 MobiDBLite consensus disorder prediction 67 100 - -
Gma05g01308 100 MobiDBLite consensus disorder prediction 70 100 - -
Gma05g01308 100 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01308 Gma-Chr5 34762058 34762360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01308 4 71 Type I MADS-box Gene Family AT4G36590 44.118 2.45e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma05g01308 SRF-TF 9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01308 - K12412 gmx:102665718 140.969