LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma05g01249	ATGGACTGGAGGCGCAGGACCAAGAACAAGAAGCACCACCCTCCTCCTCCGCCGCAGCCGCAACCGCAACCGCAACCGCGCTTGGAGCGTCTTAACGCCAAAAAAGGCATCAATTACCAACCACCACCTTCTCCTCCTTCACCATCTTCTTCTTCTGCTTCCGTTTCTTCTTCTTCTCTCTTGGATCACCAAACCAGCTTCCGCCTCTTCGGCTTCGACGGCGAGTTCGACCGCATCTTCCAGACGCTGGGCCTCTCCGGCCCAGAAGACTTCTCCATCCCCACCGCAGATTGGGAGGCCCGCAAGGCCCGCTTATCAGGGCCCACCActcctcctcctcctcctcctcctcctcACGCGCTTCCCACTTCCCTTCAAGATGACGCCGTTTCGCTTCCCGTTGCGGTTTCTTCTTCCTCCCCCTGGTCTTCCGGGGAGCACAACGTGGGTACTAGGGGCAGTGTCGGTAGATTGAATTTGAGACACGGCGAAAGGAGCGTGCTTTTCACCGATTCCAGTTCCTTCACCACTTCCCACGACGATGACAGTGATGTTGGTTGCgagagggagagggagagggagagggCTTGTTTGGCTCCTAATTCTGCACCCGCTGATGAGTTGGTTATTCCGTTTAACTCCTCCGGCGAGTGGTTCAGACAGACCTTCACCTCGTGGCAGAAAGGTGACGTCTTGGGAAATGGGTCCTTCGGAACTGTCTATGAAGGCTTCACTGATGATGGATTCTTTTTTGCGGTAAAGGAGGTGTCTTTGCTGGATGAAGGTAGCCAGGGAAAGCAGAGTTTTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTAAGTTTGAGCATAAAAACATAGTTCGATATTATGGCTCAGACAAGGACAAAAGTAAACTATATATCTTCCTTGAGCTTATGTCAAAAGGGTCCTTAGCAAGTCTCTATCAAAAGTACCGTTTAAATGATTCACAAGTTTCTGCATACACAAGGCAGATTTTAAGTGGCTTGAAGTATCTTCATGATCATAATGTGGTACACAGGGATATCAAGTGTGCTAATATACTGGTTGATGTAAGTGGGCAAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACGAAATTTAATGATGTTAAATCAAGCAAAGGTTCTCCATACTGGATGGCCCCTGAGGTTGTTAACTTAAAGAACCAAGGTGGTTATGGGCTAGCAGCTGATATATGGAGCTTAGGGTGTACCGTTTTGGAGATGTTGACAAGGCAGCCTCCTTATTCTGATTTGGAAGGAATGCAAGCATTATTTCGAATTGGCAGGGGTGAACCTCCACCTATTCCTGAATATTTATCTAAGGAAGCCCGAGATTTCATTCTTGAATGCTTACAAGTTAACCCAAACGATCGTCCAACTGCAGCTCAGCTATTTGGAATATCTATCGGCTATAACTTGACAAGTTTAATGGGTTTGCAGATATCTGCTGGAGTTGGACCTTATTTCAATGACTTCATCTTGTCCTGCCATCCCACCACGTTGATCCCATGCGGAAGAAGCATCCACCAGGAGATTGCCATGGTGAACAGTTGTCAGTCATCTGGCACAAAGTTGTCGGGCCACGTTGCTTATGCACTTTGGTTTTGCAAACTAATTCGTTGGCTAAATTACTCCAATCGTGAACTGATTCTGTTGGAATATCGGAAATGGCAAAAGGCTTTGGAAAAGAAAGAGTGGGAAGATGTTACATGTTCTGTGTGCATGGAATATCCACACAATGCTGTTCTTCTTCTTTGTTCTTCTCATGACAAGGGTTGCCGTCCCTATATGTGTGGAACTAGCTTTCGTCATTCCAACTGTCTTGATCAGTACAAGAAAGCTTATACCAAGGCAATTTCACCTAATAGGCAACCTATGCAAGGCACTCCAGGTCTGCTACAAGATTCAAACATGCATCTTGAGAAGAGTGAATCCACAGAGCTTGCATGTCCTCTATGCAGGGGTCAGGTGAAAGGTTGGACCGTTGTGGAACCTGTTCGGGACTATCTGAATGCAAAGAAAAGAGGCTGCATGCAGGATGACTGCTCATTTGTTGGGAACTATAAGGAGTTGAAGAAGCATGTGCGGGCAGAGCATCCCTCAGCACGCCCACGGATGGTGGATCCTGCCGATGAACAGAAATGGAGATGGCTCGAGTGGGAGCGTGAAAGAGAAGATGTTATCAGCACAGTAACATCAGCAATGCCTGGGGCAGTAGTTTTTGGAGATTATGTTATAGAAGGTCATCATAATGACTTTGATACAGATGAAGAGGAGGGTGCAGGTAATGCAGAAAGAAATGGAAGATTTCAGATGGGTTTAGAGGCAATGAATTTCTTCCTCCTGTTGCATGCGGTTCGGCAAGGGAATGAGCTTAACAACCTTGGTAGACGGCTGAGGCCTGAGCTGACCCACAACAGGGTTGCAGGTCAGAATGCAGCTGCCGTGCTGGATATCTCAGATGAAGACAATgataatgatggcaggtacaatgaagataataatagcaggtacaatgaagataCTGATGGCGGTGTATCTTTGGTTAGCCGTCTCCACCGCCATGGTGGTGGCAGAGTTTTATTGGGTCGTTCTGGTAGGAGGCGGAGATGTAGAGAAGCACGTGCAAGGATTGGAGATAGTTGA	2676	0.4552	MDWRRRTKNKKHHPPPPPQPQPQPQPRLERLNAKKGINYQPPPSPPSPSSSSASVSSSSLLDHQTSFRLFGFDGEFDRIFQTLGLSGPEDFSIPTADWEARKARLSGPTTPPPPPPPPHALPTSLQDDAVSLPVAVSSSSPWSSGEHNVGTRGSVGRLNLRHGERSVLFTDSSSFTTSHDDDSDVGCERERERERACLAPNSAPADELVIPFNSSGEWFRQTFTSWQKGDVLGNGSFGTVYEGFTDDGFFFAVKEVSLLDEGSQGKQSFFQLQQEISLLSKFEHKNIVRYYGSDKDKSKLYIFLELMSKGSLASLYQKYRLNDSQVSAYTRQILSGLKYLHDHNVVHRDIKCANILVDVSGQVKLADFGLAKATKFNDVKSSKGSPYWMAPEVVNLKNQGGYGLAADIWSLGCTVLEMLTRQPPYSDLEGMQALFRIGRGEPPPIPEYLSKEARDFILECLQVNPNDRPTAAQLFGISIGYNLTSLMGLQISAGVGPYFNDFILSCHPTTLIPCGRSIHQEIAMVNSCQSSGTKLSGHVAYALWFCKLIRWLNYSNRELILLEYRKWQKALEKKEWEDVTCSVCMEYPHNAVLLLCSSHDKGCRPYMCGTSFRHSNCLDQYKKAYTKAISPNRQPMQGTPGLLQDSNMHLEKSESTELACPLCRGQVKGWTVVEPVRDYLNAKKRGCMQDDCSFVGNYKELKKHVRAEHPSARPRMVDPADEQKWRWLEWEREREDVISTVTSAMPGAVVFGDYVIEGHHNDFDTDEEEGAGNAERNGRFQMGLEAMNFFLLLHAVRQGNELNNLGRRLRPELTHNRVAGQNAAAVLDISDEDNDNDGRYNEDNNSRYNEDTDGGVSLVSRLHRHGGGRVLLGRSGRRRRCREARARIGDS	891

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma05g01249	891	MobiDBLite	consensus disorder prediction	130	150	-	-
	Gma05g01249	891	ProSiteProfiles	Protein kinase domain profile.	226	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma05g01249	891	Pfam	Protein of unknown function (DUF1644)	577	739	IPR012866	-
	Gma05g01249	891	SUPERFAMILY	Protein kinase-like (PK-like)	225	477	IPR011009	-
	Gma05g01249	891	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	24	119	-	-
	Gma05g01249	891	MobiDBLite	consensus disorder prediction	1	60	-	-
	Gma05g01249	891	SMART	serkin_6	226	477	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma05g01249	891	Pfam	Protein kinase domain	227	474	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma05g01249	891	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	208	475	-	-
	Gma05g01249	891	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	345	357	IPR008271	GO:0004672\|GO:0006468
	Gma05g01249	891	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	562	717	IPR013083	-
	Gma05g01249	891	ProSitePatterns	Protein kinases ATP-binding region signature.	232	254	IPR017441	GO:0005524
	Gma05g01249	891	MobiDBLite	consensus disorder prediction	103	156	-	-
	Gma05g01249	891	MobiDBLite	consensus disorder prediction	831	852	-	-
	Gma05g01249	891	Gene3D	Transferase(Phosphotransferase) domain 1	224	482	-	-
	Gma05g01249	891	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	24	119	-	-
	Gma05g01249	891	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	208	475	-	-
	Gma05g01249	891	MobiDBLite	consensus disorder prediction	107	122	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma05g01249	Gma-Chr5	34170018	34181104	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma05g01249	223	475	MAP Kinase Kinase Kinase	AT4G08500	68.775	3.69e-116	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Gma05g01249		Pkinase	1.9e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma05g01249	-		K13414	gmx:100820552	842.802