Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01232 ATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAATGATAGGGGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACACTATGAAGAAGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGTTGGCCATTTCATGAAGGAAGAGGAGGACCATATGAAACTTCAAAAACAAGAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGAAAACAAAACAGAACCGTCAGAAGAAGAAACAGAACAAGGATGACAAGAATTTTGATCCAAACAGGCCTAAAACGAAACCTACCTCACTTTTGCAACTCTCATTCTCTTCATGCAGTTTTTATTAA 555 0.391 MRLLEDEQKQRTAMELLEQYMQFKQEAEKDGKKNKKEKDPLKPKHPMSAYFLFTNDRGAALAAENKNFLEVPKITSEEWKNMTEEQKRHYEEEQYALEMEAYKQKKDEEVGHFMKEEEDHMKLQKQEALQLLKKKEKTENIIKKTKQNRQKKKQNKDDKNFDPNRPKTKPTSLLQLSFSSCSFY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01232 184 MobiDBLite consensus disorder prediction 23 46 - -
Gma05g01232 184 MobiDBLite consensus disorder prediction 130 172 - -
Gma05g01232 184 Pfam HMG-box domain 41 94 IPR009071 -
Gma05g01232 184 SUPERFAMILY HMG-box 30 107 IPR036910 -
Gma05g01232 184 MobiDBLite consensus disorder prediction 130 165 - -
Gma05g01232 184 MobiDBLite consensus disorder prediction 23 44 - -
Gma05g01232 184 Gene3D High mobility group box domain 26 115 IPR036910 -
Gma05g01232 184 SMART hmgende2 42 104 IPR009071 -
Gma05g01232 184 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 109 IPR009071 -
Gma05g01232 184 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 177 - -
Gma05g01232 184 CDD HMGB-UBF_HMG-box 43 107 - -
Gma05g01232 184 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 177 IPR044601 GO:0003677
Gma05g01232 184 Coils Coil 114 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01232 Gma-Chr5 33986557 33987456 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma05g01232 HMG_box_2 2.4e-10 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01232 K09273 - gmx:100783033 223.402