Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01228 ATGTGTAATCAGGAGAGCCCGAGAGGGGTCTTGTATTGTTGTTGTTTCATAAAATATGCTACCTCCGAAGAAGCTGATCAGGCAATTAGAGCATTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGTTGTTGAGTACAAATTATTTGTGGGCTCTTTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGCGATGAGAAGAAACAAAGTCGTGGGTGTGGTTTTGTTAAATACTCACAAAGATATGGCTCCGGCAGCAATTATTGCGCTTAA 366 0.4235 MCNQESPRGVLYCCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGVVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSQRYGSGSNYCA 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01228 121 PANTHER FCA 13 112 - -
Gma05g01228 121 Gene3D - 2 58 IPR012677 -
Gma05g01228 121 SUPERFAMILY RNA-binding domain, RBD 61 111 IPR035979 GO:0003676
Gma05g01228 121 SMART rrm1_1 63 121 IPR000504 GO:0003723
Gma05g01228 121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 111 IPR000504 GO:0003723
Gma05g01228 121 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 13 112 - -
Gma05g01228 121 SUPERFAMILY RNA-binding domain, RBD 13 57 IPR035979 GO:0003676
Gma05g01228 121 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 111 IPR000504 GO:0003723
Gma05g01228 121 Gene3D - 60 109 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01228 Gma-Chr5 33954167 33956707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01228 16 109 Eukaryotic Initiation Factors Gene Family AT1G71770 28.713 4.44e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01228 - - gmx:100798390 200.29