Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01218 ATGTCTGACGTGGAAGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACGTCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGACGAGGCTATTGATGCTATGAATGGGATAGATTTAGACGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGTTACCGGGAGCGTGGTCGTGATCGTGATCGTAACCGAGATTATGGAGGTGGAGGTGGTCGAGGATCTAATGGTGGTGAatgctttaagtgtggaaaacctggtcattttgctagggaatgccctGGTGAAGGGTCCAGGGGAGGAAGTCTTTCAATGAGATATGAAATTGAAGAGTCAAGCGGGATTCTTGGCTAA 483 0.4099 MSDVEEFRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGIDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRNRDYGGGGGRGSNGGECFKCGKPGHFARECPGEGSRGGSLSMRYEIEESSGILG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01218 160 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Gma05g01218 160 SUPERFAMILY Retrovirus zinc finger-like domains 105 143 IPR036875 GO:0003676|GO:0008270
Gma05g01218 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Gma05g01218 160 Gene3D - 2 117 IPR012677 -
Gma05g01218 160 Gene3D - 118 158 - -
Gma05g01218 160 MobiDBLite consensus disorder prediction 76 122 - -
Gma05g01218 160 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Gma05g01218 160 PANTHER TRANSFORMER-2-RELATED 1 150 - -
Gma05g01218 160 MobiDBLite consensus disorder prediction 88 111 - -
Gma05g01218 160 Pfam Zinc knuckle 122 137 IPR001878 GO:0003676|GO:0008270
Gma05g01218 160 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 150 - -
Gma05g01218 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Gma05g01218 160 ProSiteProfiles Zinc finger CCHC-type profile. 123 137 IPR001878 GO:0003676|GO:0008270
Gma05g01218 160 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01218 Gma-Chr5 33892253 33893895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01218 3 65 C2H2 Transcription Factor Family AT2G19380 39.683 6.16e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01218 - - gmx:100815224 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01218 05 33892253 33893895 Gma08g00718 08 5909048 5912444 GST