Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01187 ATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATTTCCGACACTTACTCTCTTCTCGTTCTGAACATCACCTTCCGTACCACCGCCGACGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAATCGAGGGGTTTTGCGTTCGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAGAGGCTCGACGGTATAATGGTTGATGGTCGCGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAAAGGATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAGGCGATCAAGGAGCCGTAGCCCAAGGAAAAGGTATAATGTATTGATTGATGTCTTTATTTGCAGGCATCGTGATGATTACAGAGACAGAGATTATAGGAGAAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGCATCGTGGGAGAGACAAAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCCAGTCTTGATTACAAGGGTCGTGGTAGAGGACGCTATGATGATGAGCGTAATAGTAGAAGCCGGAGCAGATCAGTTGATAG 614 0.4788 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGIMVDGREITVQFAKYGPNAERIHKGRIIETSPRSRRSRSRSPRKRYNVLIDVFICRHRDDYRDRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSASLDYKGRGRGRYDDERNSRSRSRSVD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01187 204 MobiDBLite consensus disorder prediction 144 204 - -
Gma05g01187 204 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Gma05g01187 204 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Gma05g01187 204 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 201 - -
Gma05g01187 204 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 201 - -
Gma05g01187 204 MobiDBLite consensus disorder prediction 102 121 - -
Gma05g01187 204 SMART rrm1_1 17 90 IPR000504 GO:0003723
Gma05g01187 204 SUPERFAMILY RNA-binding domain, RBD 9 120 IPR035979 GO:0003676
Gma05g01187 204 SMART rrm2_1 17 90 IPR003954 GO:0003676
Gma05g01187 204 Gene3D - 4 104 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01187 Gma-Chr5 33566314 33568402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01187 13 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.118 7.32e-10 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01187 05 33566314 33568402 Gma08g00685 08 5681143 5685292 GST