Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01150 ATGGCTCCCCTTTCATGCTACCTTGTTGTTTTTGCTCTTTCTCTTCTGAAACCTAGCTTTGTTTCCTCGTCTGCAGTGAGAGACCCTGAGCTAGTTGTACAAGAGGTACAAAGAAGCATCAATGCCTCTAGAAGAAACTTGGGTTATTTATCATGCGGAACAGGCAACCCCATTGACGATTGCTGGCGATGTGACCCCAATTGGGAGAACAACCGGCAAAGACTAGCTGATTGCTCCATTGGGTTCGGCAAGGACGCAATTGGAGGAAAAAATGGTCGAATCTACGTGGTCACCGACTCTGGCGACGACGACGCGGTGAACCCTAGGCCAGGAACCCTAAGGTACGCAGCCATACAAGACGAGCCATTGTGGATCATGTTCAAGAGGGACATGGTAATCACGCTAAAAGAAGAGCTTTTGGTGAATTCGTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATTACCATACACTATGTTAGTAACATTATTATTCATGGTATTCACATTCATGATTGCAAGCCCACGGGGAATACCAATATTAGAGACTCTCCACATCACTCTGGGTTTTGGACTCAATCAGACGGTGATGGTGTGTCCATCTTTAATTCGAAGCATATTTGGGTTGATCATTGCTCTTTGTCTAATTGTCGTGATGGTCTCATTGATGCCATTCATGGATCCACGGCCATCACCATCTCCAACAATTACATGACCCATCATGACAAGGTTATGCTTTTGGGGCACAGTGATTCGTACACTCAAGACAAGGACATGCAGGTCACTATAGCATTCAATCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACACGGGTATTTCCATGTGGTGAACAACGACTACACCCACTGGGAAATGTACGCCATTGGTGGGAGTGCAAACCCTACCATCAACAGCCAAGGGAACAGGTTCCTTGCCCCAAATATCAGGTTCAGCAAGGAAGTGACCAAGCATGAGGATGCTCCACAGAGTGAGTGGATGGGTTGGAATTGGAGGTCAGAGGGTGACATGTTCTTGAATGGGGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCTAGCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCATCTTCTCTTGTTGGCTCCATGACCACCACTGCTGGTGCGCTTAACTGTAGAAAGGGCAACCGTTGCTGA 1215 0.4733 MAPLSCYLVVFALSLLKPSFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCSIGFGKDAIGGKNGRIYVVTDSGDDDAVNPRPGTLRYAAIQDEPLWIMFKRDMVITLKEELLVNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGNTNIRDSPHHSGFWTQSDGDGVSIFNSKHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPQSEWMGWNWRSEGDMFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTTTAGALNCRKGNRC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01150 404 SUPERFAMILY Pectin lyase-like 39 399 IPR011050 -
Gma05g01150 404 PANTHER PECTATE LYASE 18-RELATED 4 401 IPR045032 GO:0030570
Gma05g01150 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Gma05g01150 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Gma05g01150 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Gma05g01150 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Gma05g01150 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Gma05g01150 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Gma05g01150 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Gma05g01150 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Gma05g01150 404 SMART amb_all 130 327 IPR002022 -
Gma05g01150 404 Pfam Pectate lyase 137 321 IPR002022 -
Gma05g01150 404 PANTHER PECTATE LYASE 4 401 - -
Gma05g01150 404 Gene3D - 55 397 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01150 Gma-Chr5 32650998 32653656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01150 7 404 Polysaccharide Lyase AT5G63180 75.124 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01150 K01728 - gmx:100794814 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01352 17 12283326 12285745 Gma05g01150 05 32650998 32653656 GST
Gma01g02072 01 56115792 56118131 Gma05g01150 05 32650998 32653656 PCT
Gma11g00343 11 2744163 2746332 Gma05g01150 05 32650998 32653656 PCT
Gma05g01150 05 32650998 32653656 Gma01g02072 01 56115792 56118131 PCT
Gma05g01150 05 32650998 32653656 Gma11g00343 11 2744163 2746332 PCT