Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01138 ATGGGTTGCACCATGAGGGAAAAGCATATCAGAGCTAATCGGAGACCCCGATCGGTGAAACCGGACTCGGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCGGAGTCTGGTCTTAAGCCCTTCAAATACCATCTGGATCTCAACGATTCTTCCCAGAGTCCGAATTCAAACCCTAATGTAGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAATTTATATACAACGAAGCTGTGTCGAAGCTTGTTGCGTTGGGATATGATGGGGATGTTGCTGTTAAGGCCATACTGCGAAATGGGCATTGTTATGGTGGCATGGATGTGCTGACAAATATTTTGCACAATTCCTTGGCTTTTTTGAATACTAATAGTGATGGTGATGGTGGTGGTTATAGTAGTAATGGTGGGAATTTGCATGAGTCTGAGCCTGTGTTCTCTGATTTGAGGCAGTTGGAGGAGTACTCTTTGGCGGGTATGGTGTGTTTGTTGCAACAAGTGAGGCCTCATTTGAGCAAAGGGGATGCCATGTGGTGTTTGCTCATGAGTGATCTTCATGTCGGGAGGGCCAGTGCTATGGAGATTCCGGTGCCGGACAATGGGAGCACTGTGCCGGCTACCGGTGAGGGTGGTGCCAATTCGGCTGGTGTTATGGCGCCGGCTTTGTGTAGGTTTCATGGGGGGTGGGGATTTGGAAATGGGGGAGGCTTGGAATTTCCTGTGAACGGGATATTCTCTTGTGGTGCAGAGATGAATTTGCAGCTGCAACGAGACATTGAGTTTCCGAAGAGGTTAAATCTTTCTCCTTCGATGAAGTCCTTATTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCGAACTCCAAGCAATTGCAGGCGCAGGTGAAGGCCTTTCCCGGCCGGAGTACTGCACCTAATTTGGATTCTTTGGATGTGTCCGGGACAGAAGTCCTGGCTGAGCAGTCCGGAGGAGATTCAGAGAATCTTGATAACCAAGATGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGACTTAGTTGCCGAAGATCAGAAGGATGAGGTGATAGTCTCTTTATTTCATCAGATTAGGGATCTTGAGAAACAGGTCAACGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAGGCGGCAAGAAAGCTAAGCAGTGATTTGACTGAGCTCAAAATGTTGCGGATGGAAAGAGAGGAGACTCAAAAATTGAAGAAAGGGAAACCAGAACTTGAGGACACAACCATGAAGAGACTCTCAGAGATGGAGAATGCCTTGAGAAAGGCCAGTGGTCAACTGGACCTTGCGAATGCAGCTGTGAGGAGATTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCCGAGTCAGTGACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGCTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGATATTTCTGATGAAAAAGAGAAGATATTGAAGACACAAGAAATATTGGTTCAGATTAGACAATGTCAAAAGGAAGCTGAGGTAAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCCTAGCACTAGTTGAGGAGGAACGCCACTCTAAGGAAGCAGCCGAGTCTAACAATAAGAGGAAGCTCGAGACTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGCCACAAAGATGATCTACTAAGACTTGAGCAGGAGCTTTCTCGCCTTAAAGCATCTGCTCAGTCTGCCGAGTTGCATAACCAATCAAGCACTTCACCTACAAGTGACTCGGAGGGTGCAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAAGAATTGGATAATCTGGAGGACCTTTCGGAGAAAGAAGTAAACAGCAACAGAGAATGCATTGTATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCGTGCGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGTAAGGCTATTTGTCCTTGCTGCAGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAG 2154 0.4573 MGCTMREKHIRANRRPRSVKPDSDSCDKDAISKSIAESGLKPFKYHLDLNDSSQSPNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDGDVAVKAILRNGHCYGGMDVLTNILHNSLAFLNTNSDGDGGGYSSNGGNLHESEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASAMEIPVPDNGSTVPATGEGGANSAGVMAPALCRFHGGWGFGNGGGLEFPVNGIFSCGAEMNLQLQRDIEFPKRLNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQVKAFPGRSTAPNLDSLDVSGTEVLAEQSGGDSENLDNQDAVNSVLSKFRDLNLDENLDLVAEDQKDEVIVSLFHQIRDLEKQVNERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPELEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQDISDEKEKILKTQEILVQIRQCQKEAEVKWKEELKAKEEALALVEEERHSKEAAESNNKRKLETLRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHNQSSTSPTSDSEGAKPQRETIARLLQELDNLEDLSEKEVNSNRECIVCMKDEVSIVFLPCAHQVMCASCSDEYGRKGKAICPCCRVQIQQRIRVFGASS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01138 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 714 IPR013083 -
Gma05g01138 717 Pfam Zinc finger, C3HC4 type (RING finger) 660 708 - -
Gma05g01138 717 PANTHER OS05G0141500 PROTEIN 1 716 IPR046934 -
Gma05g01138 717 Pfam Family of unknown function (DUF6592) 82 204 IPR046527 -
Gma05g01138 717 Coils Coil 591 618 - -
Gma05g01138 717 ProSiteProfiles Zinc finger RING-type profile. 663 703 IPR001841 -
Gma05g01138 717 MobiDBLite consensus disorder prediction 612 633 - -
Gma05g01138 717 Coils Coil 632 659 - -
Gma05g01138 717 MobiDBLite consensus disorder prediction 1 28 - -
Gma05g01138 717 SUPERFAMILY RING/U-box 644 709 - -
Gma05g01138 717 Coils Coil 545 575 - -
Gma05g01138 717 Coils Coil 443 484 - -
Gma05g01138 717 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 716 - -
Gma05g01138 717 Coils Coil 506 533 - -
Gma05g01138 717 MobiDBLite consensus disorder prediction 612 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01138 Gma-Chr5 32401325 32408962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01138 654 713 C3H Transcription Factor Family AT1G73950 40.000 5.64e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01138 - - gmx:100777787 1344.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01138 05 32401325 32408962 Gma05g01138 05 32401325 32408962 ECH
Gma17g01412 17 13250071 13256016 Gma05g01138 05 32401325 32408962 GST
Gma11g00389 11 3161355 3164885 Gma05g01138 05 32401325 32408962 PCT
Gma05g01138 05 32401325 32408962 Gma11g00389 11 3161355 3164885 PCT