Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01128 ATGGACGCGCGCGAGCCGCTCCGCCCACCGCCGCCCACTATCATGGCGGGCCCCACATCCTACGGTTCCGCCAACATCGGCCCTAATTCCTCCGCCACCGTCTCCGCCATGCTGGCCCCCGCCACCGCGCAATTCCCCTTCGCCGCCGTGCCGCAACAGCACCAGCCTCCTCCCTCGTCGGAGCCGTTCCCCGCCTCCGCATACGACGGCTCCTCCTCGCCGATGAAGGCCTGCTCCCTCGCCAAGAAGAAGCGCGGCCGGCCCCGGAAATACTCGCCGGACGGTAACATTGCCCTCCGCCTCGCTCCAACCCATGCCTCGCCGCCCGCTGCTGCCTCCGGAGGCGGCGGCGGCGGCGATTCTGCCGGCATGGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCACCCGGGTCTGGGAAGAAACAGCTTGATGCCCTCGGTGCTGGTGGGGTTGGGTTTACGCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACAGCAAAAATTATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGCGCAATTGGTAATGTCACCCTTCAACAGTCTGCAATGACGGGTGGTATTGCTACGTATGAGGGCCGCTTTGAGATTATATCTTTATCAGGTTCTTTGCAGCAATCTGAAAATAACAGTGAACGCAGTAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAATTGCAGCATCAACTGTACAGGTCATTGTGGGCAGCTTTATTGCGGATGCGAAAAAGTCGAGCTCCAATGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTTCATCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACAGGATCATAGTCCTTTTTGTAGGGGGCCAGGGCCTGGGTCTGGACATGGACTCTACAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTAA 1089 0.5776 MDAREPLRPPPPTIMAGPTSYGSANIGPNSSATVSAMLAPATAQFPFAAVPQQHQPPPSSEPFPASAYDGSSSPMKACSLAKKKRGRPRKYSPDGNIALRLAPTHASPPAAASGGGGGGDSAGMASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLQQSAMTGGIATYEGRFEIISLSGSLQQSENNSERSRTCTLNVTLAGSDGRVLGGGVAGTLIAASTVQVIVGSFIADAKKSSSNALKSGSSSAPPPQMLTFGSSMTPNSPTSQGPSTESSEEQDHSPFCRGPGPGSGHGLYNNASQPVHNMPMYHHPLWAGQSHQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01128 362 CDD DUF296 157 271 IPR005175 -
Gma05g01128 362 MobiDBLite consensus disorder prediction 1 30 - -
Gma05g01128 362 MobiDBLite consensus disorder prediction 1 16 - -
Gma05g01128 362 MobiDBLite consensus disorder prediction 47 144 - -
Gma05g01128 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 273 - -
Gma05g01128 362 Gene3D - 158 284 - -
Gma05g01128 362 ProSiteProfiles PPC domain profile profile. 152 293 IPR005175 -
Gma05g01128 362 MobiDBLite consensus disorder prediction 280 319 - -
Gma05g01128 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 271 IPR005175 -
Gma05g01128 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 55 323 - -
Gma05g01128 362 MobiDBLite consensus disorder prediction 280 345 - -
Gma05g01128 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 323 IPR039605 GO:0003680
Gma05g01128 362 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Gma05g01128 362 SMART AT_hook_2 132 144 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01128 Gma-Chr5 32213118 32218221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01128 81 362 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.290 3.01e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01128 - - gmx:100789717 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01128 05 32213118 32218221 Gma05g01128 05 32213118 32218221 ECH
Gma17g01420 17 13342884 13348596 Gma05g01128 05 32213118 32218221 GST
Gma01g02018 01 55611603 55615055 Gma05g01128 05 32213118 32218221 PCT
Gma11g00392 11 3183029 3187015 Gma05g01128 05 32213118 32218221 PCT
Gma05g01128 05 32213118 32218221 Gma01g02018 01 55611603 55615055 PCT
Gma05g01128 05 32213118 32218221 Gma11g00392 11 3183029 3187015 PCT