Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01125 ATGTGGAATCCTAGGGACCAATATCATCATCAGGACCAAGATCAAGATGAGTCGTGGGAAGTCAGAGCCTTCGCAGAAGACACCAGTAACATCATGGGCACCACCTGGCCTCCTAGGTCCTACTCCTGCACCTTCTGTAGAAAGGAGTTCCGTTCAGCACAAGCCCTCGGCGGCCACATGAACGTTCACCGCCGCGACCGCGCCCGCCTCCACCAAGCCTCAGTACCCCACAACAACCCCTCTTTTTCTCCCACACCCTCTTTTCTTAACATCTCTCATCAGGAGCCTTTTGTTGCAAATGGGGGTTTGTGCCTCTTGTACCCCTTTCCAAGCCCTAATAACAATGCTCCATTTTCCTCTCTAGGCCACAACAATAATGCATGTGGTGACTCACCTTCCACTGCTTTTTCAGTTTCTTCTTCTCATTCCCTTCAGTACCCTCCAATGAGGGTGCCTAGTTGCTCAGCTTCTACTTCCTTTGATTTCTCTGTGGCTCAGCCTGCTCCTCCTGCTGTAGGGAGGAATAATAATGGTTTCTCTTCTTCTTATTCTGGGAAAGTGGAACAAGAACCACCCACAAACGACTCTTCAACCCATCATGGTCATGGCCGCCACCACCATGATGAGGAGCTTGATCTAGAGCTCCGCTTGGGAAATAAATCAACATCAACGTGA 675 0.5007 MWNPRDQYHHQDQDQDESWEVRAFAEDTSNIMGTTWPPRSYSCTFCRKEFRSAQALGGHMNVHRRDRARLHQASVPHNNPSFSPTPSFLNISHQEPFVANGGLCLLYPFPSPNNNAPFSSLGHNNNACGDSPSTAFSVSSSHSLQYPPMRVPSCSASTSFDFSVAQPAPPAVGRNNNGFSSSYSGKVEQEPPTNDSSTHHGHGRHHHDEELDLELRLGNKSTST 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01125 224 Gene3D Classic Zinc Finger 29 81 - -
Gma05g01125 224 MobiDBLite consensus disorder prediction 170 224 - -
Gma05g01125 224 SUPERFAMILY beta-beta-alpha zinc fingers 38 68 IPR036236 -
Gma05g01125 224 MobiDBLite consensus disorder prediction 173 192 - -
Gma05g01125 224 SMART c2h2final6 41 63 IPR013087 -
Gma05g01125 224 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Gma05g01125 224 PANTHER OS07G0101800 PROTEIN 1 222 - -
Gma05g01125 224 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 1 222 - -
Gma05g01125 224 MobiDBLite consensus disorder prediction 193 216 - -
Gma05g01125 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gma05g01125 224 Pfam C2H2-type zinc finger 41 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01125 Gma-Chr5 32105562 32106236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01125 1 75 C2H2 Transcription Factor Family AT4G17810 69.231 1.54e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma05g01125 zf-C2H2_6 2.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01125 - - gmx:102660237 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01424 17 13411372 13412067 Gma05g01125 05 32105562 32106236 GST
Gma01g02016 01 55574414 55575166 Gma05g01125 05 32105562 32106236 PCT
Gma11g00394 11 3219692 3220474 Gma05g01125 05 32105562 32106236 PCT
Gma05g01125 05 32105562 32106236 Gma01g02016 01 55574414 55575166 PCT
Gma05g01125 05 32105562 32106236 Gma11g00394 11 3219692 3220474 PCT