Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01122 ATGATGGAGGAATTGAACAAACCAATGGACGGATCAGCAACCAGCTGGTTATCCGATTTGGAAATGGATGATTACAATTTATTTCCAGATGAATGTCCCTTGAACTTGAACTTGTTTGATGACCAAGAGTTTCTCTCACAAGACATTGCTAGTGCCCTTCAAGAACAGACACAGACCTTGCAACAATCTTTGTCTTCAGAGTGCCCTTCAAAAACTGTGAGCAACTCATCCACCGATGAAACCACTTTTGACTTTGAGAGACCAGCCAAGTTGCTGAAAACGACAACAAGCAGTAGTTGTTGTAACTCTGACTCATCCACCATCACCAAAAGCCTTTCACCCAAACTTTCCCCATCGTCATCTTTTTCCTCATTTCAGTCTCAGATTCTCTCCTTTGACAATCCTAACCCAACCTCATCTTCCAACACCACCACCCAGTTTTATGGGTTTGACTGTACCTTAAACCCAACACAGAACGAGATGGTGTCAGTGTCAGTCCCCAACATGAGAAAACCACGGTTCCCAACTCAAACCGCAAAAGGTTCACCGAAAAATCAAAACTTTGAAACAAAAACCTCACATGGTAAGAGGTCTCCAGCTCATGCTCAAGATCACATCATGGCTGAAAGAAAACGAAGAGAGAAACTCAGCCAGAGCTTCATTGCCCTTGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTGAAAGAGCTTAAAGAGCGGTTAACAGTGCTTGAAGAGCAGAGCAAAAAATCAAGGGCAGAGTCAGTAGTGGTTCTGAACAAGCCAGACCTCTCTGGCGATGATGATTCTTCTTCATGTGATGAGAGCATTGGTGCTGATAGTGTCAGTGACTCACTGTTTGAAGTGGAATCAAGAGTATCAGGGAAGGAGATGCTGCTCAGGATCCACTGCCAGAAGCAAAAGGGTCTTTTGGTCAAATTACTGGCCGAGATTCAAAGCCATCACTTATTTGTTGCTAATAGCAGTGTATTACCCTTTGGTGATTCTATCCTTGACATTACCATAGTGGCTCAGATGGGAGAAAGTTACAATTTGACCACTAAGGAACTTGTCAAGAACCTACGCGTGGCTGCATTGAAGATATTGTCATAA 1149 0.436 MMEELNKPMDGSATSWLSDLEMDDYNLFPDECPLNLNLFDDQEFLSQDIASALQEQTQTLQQSLSSECPSKTVSNSSTDETTFDFERPAKLLKTTTSSSCCNSDSSTITKSLSPKLSPSSSFSSFQSQILSFDNPNPTSSSNTTTQFYGFDCTLNPTQNEMVSVSVPNMRKPRFPTQTAKGSPKNQNFETKTSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKELKERLTVLEEQSKKSRAESVVVLNKPDLSGDDDSSSCDESIGADSVSDSLFEVESRVSGKEMLLRIHCQKQKGLLVKLLAEIQSHHLFVANSSVLPFGDSILDITIVAQMGESYNLTTKELVKNLRVAALKILS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01122 382 MobiDBLite consensus disorder prediction 60 81 - -
Gma05g01122 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 266 IPR036638 GO:0046983
Gma05g01122 382 Gene3D - 189 266 IPR036638 GO:0046983
Gma05g01122 382 Pfam Helix-loop-helix DNA-binding domain 204 249 IPR011598 GO:0046983
Gma05g01122 382 Coils Coil 239 266 - -
Gma05g01122 382 MobiDBLite consensus disorder prediction 174 211 - -
Gma05g01122 382 MobiDBLite consensus disorder prediction 190 211 - -
Gma05g01122 382 PANTHER BHLH TRANSCRIPTION FACTOR 5 382 - -
Gma05g01122 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Gma05g01122 382 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 382 - -
Gma05g01122 382 CDD bHLH_AtNAI1_like 201 273 - -
Gma05g01122 382 SMART finulus 206 255 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01122 Gma-Chr5 31966580 31969038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01122 13 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.314 5.65e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma05g01122 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01122 - - gmx:100788128 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01428 17 13464047 13466464 Gma05g01122 05 31966580 31969038 GST