Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01121 ATGGAGGAATCATGGACTAGTTGTCTTTGTGACATGGAACCAGATGATTACAGTTTCATAGGTCAATCAGACATAAAAGTGGATGATGTGAATGGATGTTTAGTATCTCCTCATGATGTAGCCACTGCATTATTAGAGAAGAACCAGCAAAGCTTATTTTCCAGAGAGAGTCACTCTTCAGCGGCTGAGAGTGGCTTAGAGAGGCCTTTCAAGTTGCCAAAGAGAGAACAACTCTCACAAAAGATAGCTTCTAGTTCTACTCCCAGCTCCTATATTCTCTCCTTTGACAACATGAATCCACCAACAATAAAGGTTGAATCTGCCTCAAAGCCAGGCACCAAGGTTGTGAATCTTGAGAAAGCTTTGCCTTCAAAGAATGAACCAACAAGACCACAGGAAAACAAGAAAATGGGCTCATTTGCCAGATCTTCTCATCACACACAAGATCACATCATTGCTGAGAGAATGAGGAGAGAGAAAATTAGCCAGCAGTTCATTGCCCTCTCTGCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTCTGTTGGGGGAGGCTATAAGGTATgtgaagcagctgaaggagcaagtgaagctgctggaggagcaGAGCAAAAGGAAAAACGAGGAATCTGTGATGTTTGCGAAGAAATCTCAGGTTTTTCTTGCGGACGAGGATGTCTCAGACACTTCGTCAAACTCCTGCGAGTTCGGAAACTCCGATGATCCCTCGTCAAAAGCGAATTTTTTGTCACTACCAGAAGTTGAAGCGAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAGGAAAAGACAGTGCTGGTGAACATTTTCAGAGAGATAGAGAAACTTCATCTCTCGATCATCTATAGTAGCGCCTTGTCTTTCGGTTCCTCTGTTCTCGACACAACCATAGTAGCCGAGATGGAGGATGAATTCAACATGGGGGTGAAGGAACTGGCTAGAAATCTCAGAGTAGGATTAATGCAATTTATGTAG 1011 0.4164 MEESWTSCLCDMEPDDYSFIGQSDIKVDDVNGCLVSPHDVATALLEKNQQSLFSRESHSSAAESGLERPFKLPKREQLSQKIASSSTPSSYILSFDNMNPPTIKVESASKPGTKVVNLEKALPSKNEPTRPQENKKMGSFARSSHHTQDHIIAERMRREKISQQFIALSALIPDLKKMDKVSLLGEAIRYVKQLKEQVKLLEEQSKRKNEESVMFAKKSQVFLADEDVSDTSSNSCEFGNSDDPSSKANFLSLPEVEARVSKKNVLIRILCEKEKTVLVNIFREIEKLHLSIIYSSALSFGSSVLDTTIVAEMEDEFNMGVKELARNLRVGLMQFM 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01121 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Gma05g01121 336 PANTHER BHLH TRANSCRIPTION FACTOR 1 336 - -
Gma05g01121 336 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 336 - -
Gma05g01121 336 SMART finulus 151 200 IPR011598 GO:0046983
Gma05g01121 336 Coils Coil 184 211 - -
Gma05g01121 336 MobiDBLite consensus disorder prediction 123 145 - -
Gma05g01121 336 Gene3D - 143 216 IPR036638 GO:0046983
Gma05g01121 336 Pfam Helix-loop-helix DNA-binding domain 149 195 IPR011598 GO:0046983
Gma05g01121 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01121 Gma-Chr5 31832034 31834228 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01121 135 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.010 8.33e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma05g01121 HLH 5.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01121 - - gmx:100787596 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01429 17 13481040 13483540 Gma05g01121 05 31832034 31834228 GST
Gma01g02012 01 55530567 55533434 Gma05g01121 05 31832034 31834228 PCT
Gma11g00398 11 3262373 3264934 Gma05g01121 05 31832034 31834228 PCT
Gma05g01121 05 31832034 31834228 Gma01g02012 01 55530567 55533434 PCT
Gma05g01121 05 31832034 31834228 Gma11g00398 11 3262373 3264934 PCT