Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01118 ATGAGTTATTCTCCCTGGTATTGGAATATTGTCGAATCTTATCCTTTCTATGAATTGGACAGGGTTCTTTTTTCTTTTGGTAAAGCTATGGACATGGTTCTGAGAAAGAGACTCTTAGTTTCACCAAATAAACGAAGCGTGTACGTGCCCGGCCCCTTTATAAAACACTCTCTTAGTTTCACCAATTTGTTCCAACGTTGCTCCCATCACTCAACTGTCACAACAACAAACACTTCATCTTCTGAGCCTTCTACCTTTCTTTCTTTCTTCAATCAATTAAGGCGAGGTGAATTAAGGATGATGCAAATTTCGTCAACCATGTACATGCCTGAATTTGGAATGGAGGACCCCACTTTGTTTCACCAATACCCTATGGATAATTCTGTATTATTCCAGCTCGAAGATCTTGACTTTGAGTCCTTCTCCGCGTCCCCAAAGAACTCTTCCTCTCCCAAGCGATTCAACTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAATCCTGAACAATATTCTGTTACCCCTCCAAGACCAACCAAGCAAAATAAGACTGTGAGCACTACTTGGAGTGCTTACAACACTCATGACATGATGGCTCCGAAAGCTTCTTCTTCTTCATCCTCCAAGATCATCTCCTTTGAGAACTCCAATGCATCTTCGGTTACTTCCCAACAACTATACAACGTGGATGCTGCTTCCAAAGTGAAGAAGCCCAAGAGTGAAACTGGGTATGGTGAAAACTTGGATTTTGCAGCAGCTGCGGCTTCTCAAAGTGTCTATGACAACAACAGTTTTCTAGATCACTATGATACTCGAGAGAAAAAGGCTGCAGCTTCATTGACTAGAAACCCTACCCAAGCTCAAGATCATGTAATATCCGAGAGAAAACGAAGGGAAAAGCTCAGTCAGAGGTTCATTGCTCTTTCGGCTATAATTCCTGGACTCAAGAAGATGGACAAGGCTACCGTCTTGGAAGATGCTATAAAGTACGTGAAACAACTACAAGAAAGGGTAAAGACTCTGGAGGAACAAGCTGTGGATAAAACAGTTGAATCAGCAGTATTTGTGAAGAGATCTGTTGTGTTTGCCGGTGATGATAGCTCCGACAACGACGAAAACTCCGACCAGTCGCTCCCCAAAATCGAAGCAAGAATTTCTGGTAAAGAGGTACTAATCAGAATCCACTCCGACAAACACAGTGGAGGAGCTGCTGCTATACTAAGGGAATTAGAGAAGCATCATCTCACAGTTCAGAGTAGCAGCTTCTTGCCCTTTGGGAATAACACTTTTGACATTACTATTGTTGCCAAGATGAACATGGACTACTGCTTCACAGCAAAGGATCTCATAAGAAGCTTAAGTCGGTGTTTGAGGCAGCTTTGA 1383 0.4266 MSYSPWYWNIVESYPFYELDRVLFSFGKAMDMVLRKRLLVSPNKRSVYVPGPFIKHSLSFTNLFQRCSHHSTVTTTNTSSSEPSTFLSFFNQLRRGELRMMQISSTMYMPEFGMEDPTLFHQYPMDNSVLFQLEDLDFESFSASPKNSSSPKRFNSESTQNSSLTQNPEQYSVTPPRPTKQNKTVSTTWSAYNTHDMMAPKASSSSSSKIISFENSNASSVTSQQLYNVDAASKVKKPKSETGYGENLDFAAAAASQSVYDNNSFLDHYDTREKKAAASLTRNPTQAQDHVISERKRREKLSQRFIALSAIIPGLKKMDKATVLEDAIKYVKQLQERVKTLEEQAVDKTVESAVFVKRSVVFAGDDSSDNDENSDQSLPKIEARISGKEVLIRIHSDKHSGGAAAILRELEKHHLTVQSSSFLPFGNNTFDITIVAKMNMDYCFTAKDLIRSLSRCLRQL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01118 460 CDD bHLH_AtNAI1_like 287 359 - -
Gma05g01118 460 Coils Coil 324 351 - -
Gma05g01118 460 MobiDBLite consensus disorder prediction 142 185 - -
Gma05g01118 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 345 IPR036638 GO:0046983
Gma05g01118 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Gma05g01118 460 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 100 458 - -
Gma05g01118 460 Pfam Helix-loop-helix DNA-binding domain 288 335 IPR011598 GO:0046983
Gma05g01118 460 SMART finulus 291 340 IPR011598 GO:0046983
Gma05g01118 460 Gene3D - 277 349 IPR036638 GO:0046983
Gma05g01118 460 PANTHER BHLH TRANSCRIPTION FACTOR 100 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01118 Gma-Chr5 31772416 31776668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01118 267 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.490 4.62e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma05g01118 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01118 - - gmx:100798011 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01430 17 13503017 13506350 Gma05g01118 05 31772416 31776668 GST
Gma01g02010 01 55511428 55517186 Gma05g01118 05 31772416 31776668 PCT
Gma11g00399 11 3276624 3279067 Gma05g01118 05 31772416 31776668 PCT
Gma05g01118 05 31772416 31776668 Gma01g02010 01 55511428 55517186 PCT
Gma05g01118 05 31772416 31776668 Gma11g00399 11 3276624 3279067 PCT