Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01116 ATGCGAGTCCTCGTCTTGTTCTTCCTTTTCCTCCACTCCCTCCAAGCAGCGCGCATCTCAGAGTACCGCGCGCTGCTCTCTTTCAAAGCCTCCTCCTTAACCGACGACCCCACCCATGCTCTCTCCTCCTGGAACTCCTCCACTCCCTTCTGCTCCTGGTTCGGCCTCACGTGCGACTCTCGCCGCCACGTGACCAGCCTCAACTTAACCTCGTTATCTCTCTCCGGCACTTTATCCGATGACCTCTCCCACCTTCCGTTCCTCTCGCACCTCTCCCTCGCCGACAATAAGTTCTCCGGCCCCATCCCCGCCTCTTTCTCCGCCCTCTCCGCCCTCCGCTTCCTCAACCTCTCCAACAACGTTTTCAACGCCACCTTCCCTTCCCAGCTCAATCGCCTCGCCAACCTTGAGGTTCTCGACCTCTACAACAACAACATGACCGGAGAACTTCCTCTCTCCGTCGCTGCCATGCCCCTCCTCCGCCACCTTCACCTCGGCGGCAACTTCTTCTCCGGCCAGATCCCTCCCGAGTACGGCACCTGGCAGCACCTCCAGTACCTCGCCCTCTCCGGCAACGAGCTCGCCGGCACCATCGCGCCCGAGCTCGGAAACCTCTCCTCCCTCCGCGAGCTCTACATCGGCTACTACAACACCTACTCCGGCGGCATCCCGCCCGAGATTGGAAACCTGTCCAACCTCGTCCGGTTAGACGCCGCCTACTGCGGCCTCTCCGGCGAGATTCCGGCGGAGCTCGGGAAGCTCCAGAATCTGGACACGCTGTTTCTTCAGGTGAATGCGCTCTCCGGCTCGCTCACCCCCGAGCTGGGGAGCCTCAAGAGCCTCAAGTCCATGGACCTCTCCAACAACATGCTCTCCGGCGAGGTTCCGGCGAGTTTTGCGGAGCTGAAGAATCTTACTCTGTTGAACCTGTTCCGGAACAAGCTCCACGGCGCGATTCCTGAGTTTGTTGGAGAGTTACCGGCCTTGGAGGTGTTGCAGCTTTGGGAGAACAACTTCACTGGGAGCATTCCTCAGAATTTGGGGAATAATGGAAGACTCACTCTCGTTGATCTTTCTTCGAACAAGATAACAGGGACGCTTCCTCCTAATATGTGTTACGGGAACCGTCTTCAGACTCTGATAACTCTCGGGAACTATCTGTTCGGTCCCATTCCTGATTCGCTTGGGAAATGCAAGTCTCTGAATAGGATTCGAATGGGAGAGAACTTTCTGAACGGTTCTATTCCGAAGGGTCTATTTGGGCTTCCGAAGCTTACCCAGGTTGAGCTTCAAGATAATCTTCTCACGGGGCAGTTTCCGGAAGATGGTTCCATTGCCACTGATCTTGGTCAGATTAGTCTCTCTAATAACCAGCTCTCTGGGTCGTTGCCATCTACCATTGGCAACTTCACTAGCATGCAGAAGCTTCTTCTTAATGGTAACGAGTTTACGGGGCGAATTCCTCCTCAGATTGGGATGTTGCAACAACTTTCTAAGATTGATTTTAGCCATAACAAGTTCTCGGGTCCCATTGCTCCTGAGATAAGTAAGTGCAAGCTTTTGACCTTCATTGATCTCAGCGGTAATGAGCTCTCTGGTGAGATTCCAAACAAGATTACTTCCATGCGGATTTTGAATTATCTCAACCTTTCAAGAAACCATCTTGATGGGTCCATTCCAGGCAACATTGCCTCTATGCAGAGTCTAACTTCTGTTGATTTTTCATACAACAATTTCTCTGGTTTGGTTCCCGGCACTGGGCAATTCGGCTACTTTAACTACACTTCTTTCTTAGGGAACCCTGAACTCTGTGGCCCTTATTTGGGTCCTTGTAAGGATGGTGTTGCCAATGGCCCTCGACAACCTCATGTTAAAGGTCCATTCTCTTCTTCTCTGAAGCTTTTGTTGGTTATTGGGTTGCTTGTGTGCTCCATACTATTCGCAGTTGCGGCAATATTCAAAGCCCGGGCTTTGAAGAAGGCCAGTGAAGCTAGAGCATGGAAATTAACCGCATTCCAGCGTTTGGACTTCACTGTTGATGATGTTTTGGATTGCTTGAAGGAGGACAACATAATAGGGAAAGGGGGTGCTGGCATTGTGTACAAAGGGGCAATGCCGAACGGGGGTAACGTTGCTGTGAAGAGGTTACCAGCTATGAGCAGAGGATCATCCCATGATCATGGTTTCAATGCTGAGATTCAGACATTGGGGAGGATTCGACACAGACACATTGTTAGACTGCTGGGTTTCTGTTCAAACCATGAGACAAATCTCTTGGTGTATGAGTACATGCCTAATGGAAGTTTAGGTGAGGTTCTTCATGGCAAGAAAGGGGGCCACTTGCATTGGGACACTAGGTATAAGATTGCTGTGGAGGCTGCTAAGGGTCTTTGCTATCTACACCATGACTGCTCACCACTCATCGTCCATAGAGATGTTAAATCCAACAACATCCTTCTTGATTCCAATTTTGAAGCACATGTTGCTGATTTTGGGCTCGCTAAGTTCCTGCAAGATTCTGGAGCATCTGAATGCATGTCTGCTATTGCTGGTTCTTATGGATACATAGCTCCAGAGTATGCCTACACTTTGAAAGTCGATGAGAAAAGCGATGTGTACAGCTTTGGAGTGGTTCTTTTGGAGCTTGTAACAGGCAGGAAACCAGTTGGCGAGTTTGGTGATGGTGTGGACATTGTGCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGGTGTTCTAAAAGTTCTTGATTCCAGACTTCCCTCAGTTCCACTTCATGAGGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAGGAACAGGCAGTGGAACGGCCTACAATGCGCGAAGTTGTTCAAATTCTGACCGAGCTTCCAAAGCCACCAAGCTCAAAACATGCAATCACAGAATCCTCTTTGTCGTCATCAAACAGTTTAGGGTCTCCAACCACGGCATCAAAGGAACCTAAAGATAATCAACATCCTCCTCAGTCGCCACCACCCGATCTACTTAGTATTTGA 3027 0.5018 MRVLVLFFLFLHSLQAARISEYRALLSFKASSLTDDPTHALSSWNSSTPFCSWFGLTCDSRRHVTSLNLTSLSLSGTLSDDLSHLPFLSHLSLADNKFSGPIPASFSALSALRFLNLSNNVFNATFPSQLNRLANLEVLDLYNNNMTGELPLSVAAMPLLRHLHLGGNFFSGQIPPEYGTWQHLQYLALSGNELAGTIAPELGNLSSLRELYIGYYNTYSGGIPPEIGNLSNLVRLDAAYCGLSGEIPAELGKLQNLDTLFLQVNALSGSLTPELGSLKSLKSMDLSNNMLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGELPALEVLQLWENNFTGSIPQNLGNNGRLTLVDLSSNKITGTLPPNMCYGNRLQTLITLGNYLFGPIPDSLGKCKSLNRIRMGENFLNGSIPKGLFGLPKLTQVELQDNLLTGQFPEDGSIATDLGQISLSNNQLSGSLPSTIGNFTSMQKLLLNGNEFTGRIPPQIGMLQQLSKIDFSHNKFSGPIAPEISKCKLLTFIDLSGNELSGEIPNKITSMRILNYLNLSRNHLDGSIPGNIASMQSLTSVDFSYNNFSGLVPGTGQFGYFNYTSFLGNPELCGPYLGPCKDGVANGPRQPHVKGPFSSSLKLLLVIGLLVCSILFAVAAIFKARALKKASEARAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPNGGNVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDSRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKHAITESSLSSSNSLGSPTTASKEPKDNQHPPQSPPPDLLSI 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01116 1008 SUPERFAMILY RNI-like 218 583 - -
Gma05g01116 1008 Gene3D Ribonuclease Inhibitor 351 615 IPR032675 -
Gma05g01116 1008 MobiDBLite consensus disorder prediction 967 994 - -
Gma05g01116 1008 SMART serkin_6 686 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01116 1008 SUPERFAMILY Protein kinase-like (PK-like) 680 957 IPR011009 -
Gma05g01116 1008 Gene3D Transferase(Phosphotransferase) domain 1 764 978 - -
Gma05g01116 1008 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 995 - -
Gma05g01116 1008 Gene3D Phosphorylase Kinase; domain 1 652 763 - -
Gma05g01116 1008 Pfam Protein tyrosine and serine/threonine kinase 688 957 IPR001245 GO:0004672|GO:0006468
Gma05g01116 1008 SUPERFAMILY L domain-like 43 271 - -
Gma05g01116 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Gma05g01116 1008 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 995 - -
Gma05g01116 1008 ProSiteProfiles Protein kinase domain profile. 686 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g01116 1008 SMART LRR_typ_2 566 589 IPR003591 -
Gma05g01116 1008 SMART LRR_typ_2 278 301 IPR003591 -
Gma05g01116 1008 SMART LRR_typ_2 85 108 IPR003591 -
Gma05g01116 1008 SMART LRR_typ_2 109 133 IPR003591 -
Gma05g01116 1008 SMART LRR_typ_2 326 350 IPR003591 -
Gma05g01116 1008 SMART LRR_typ_2 157 183 IPR003591 -
Gma05g01116 1008 Gene3D Ribonuclease Inhibitor 81 346 IPR032675 -
Gma05g01116 1008 Gene3D Ribonuclease Inhibitor 15 80 IPR032675 -
Gma05g01116 1008 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Gma05g01116 1008 MobiDBLite consensus disorder prediction 961 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01116 Gma-Chr5 31698701 31702559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01116 12 993 Receptor kinase-like Gene Family AT5G65700 79.171 0.0 1571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma05g01116 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01116 - - gmx:547592 1959.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01433 17 13543330 13547195 Gma05g01116 05 31698701 31702559 GST
Gma01g02009 01 55491364 55495123 Gma05g01116 05 31698701 31702559 PCT
Gma11g00400 11 3290511 3294043 Gma05g01116 05 31698701 31702559 PCT
Gma05g01116 05 31698701 31702559 Gma01g02009 01 55491364 55495123 PCT
Gma05g01116 05 31698701 31702559 Gma11g00400 11 3290511 3294043 PCT