Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01109 ATGATGGGTCTTGATCAAGATGCTAGCAGCAACTCTGGCCTTCAGCTTATTCTAGGGTTAGCTTTGACTGCCACCACCACCACCACTCCATCATCACCACCATCCATTTCCAACAAGCTTGATCATGTTGATCATCACCACCATCTTATAACTCTTAGACCAACAACAAAGTCATCCTATAATTCCTCTGAGGCTGAACCATCATTAACGTTGGGTCTTTCCCGGGAGAGTTACCTCAAAGTCCCCAAAAGCATCATAGGACACAACAACAACAAAGTCTCATCCTGTGATGACCCTCTTGACTTGTCCACACAGACTAATTCACCTCATCACAGTGCTGTTTCCTCCTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGATCTCAGCTGTGAAGAAGTTGTGGATGCAAAAGAGATTGATCAGAGGGATCTTAGCTGTGAAGGAATAATAAGAGCCACCGAAGAAGAAGAAGACGGCGCCGCCACCAGAAAGAAACTTAGGCTCACCAAAGAACAATCTGCTTTGCTAGAAGAAAGCTTCAAACAACATAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGTCGAAGCAGTTAAATCTAAGGCCACGACAAGTTGAGGTGTGGTTCCAGAACAGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGATGAAAACAGACGGTTACAGAAGGAGCTTCAAGAGCTGAAGGCACTGAAACTGGCTCAGCCGTTGTACATGCCTATGCCTGCGGCAACACTCGCCATGTGCCCCTCTTGCGAGAGGCTCGGCGGCAGCGCCGTCAACGGTGCCGGCGGTTCCCCCAAGACATCATTCTCCATGGCCCCTAAGCCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 936 0.485 MMGLDQDASSNSGLQLILGLALTATTTTTPSSPPSISNKLDHVDHHHHLITLRPTTKSSYNSSEAEPSLTLGLSRESYLKVPKSIIGHNNNKVSSCDDPLDLSTQTNSPHHSAVSSFSSGRVKRERDLSCEEVVDAKEIDQRDLSCEGIIRATEEEEDGAATRKKLRLTKEQSALLEESFKQHSTLNPKQKQALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLAMCPSCERLGGSAVNGAGGSPKTSFSMAPKPHFFNPFANPSAAC 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01109 311 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Gma05g01109 311 Pfam Homeobox associated leucine zipper 219 253 IPR003106 GO:0006355|GO:0043565
Gma05g01109 311 SMART halz 219 262 IPR003106 GO:0006355|GO:0043565
Gma05g01109 311 Gene3D - 156 224 - -
Gma05g01109 311 SMART HOX_1 161 223 IPR001356 GO:0003677
Gma05g01109 311 MobiDBLite consensus disorder prediction 90 121 - -
Gma05g01109 311 Pfam Homeodomain 163 217 IPR001356 GO:0003677
Gma05g01109 311 Coils Coil 225 255 - -
Gma05g01109 311 CDD homeodomain 163 220 IPR001356 GO:0003677
Gma05g01109 311 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Gma05g01109 311 PANTHER - 54 311 - -
Gma05g01109 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 54 311 - -
Gma05g01109 311 SUPERFAMILY Homeodomain-like 162 227 IPR009057 -
Gma05g01109 311 MobiDBLite consensus disorder prediction 90 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01109 Gma-Chr5 31521554 31523228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01109 2 311 Homeobox Transcription Factor Family AT4G37790 54.890 3.60e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma05g01109 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01109 K09338 - gmx:100784937 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01444 17 13709210 13711060 Gma05g01109 05 31521554 31523228 GST
Gma01g01998 01 55406161 55408007 Gma05g01109 05 31521554 31523228 PCT
Gma11g00411 11 3372807 3374603 Gma05g01109 05 31521554 31523228 PCT
Gma05g01109 05 31521554 31523228 Gma01g01998 01 55406161 55408007 PCT
Gma05g01109 05 31521554 31523228 Gma11g00411 11 3372807 3374603 PCT