Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01104 ATGGGAAGAGCTCCTTGCTGTGACAAAGCTAATGTCAAGAGAGGTCCATGGTCACCTGAAGAAGACACCAGACTCAAATCTTATATTGAAGAGCATGGCACTGGTGGCAACTGGATAGCGTTGCCTCAAAAATTAGGCCTCAAGAGGTGTGGGAAAAGCTGTCGTCTCAGGTGGCTGAATTATCTTCGTCCAAACATCAAACACGGAAATTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTACCATTGGAAGCAGGTGGTCTATTATAGCAGCGCAATTACCAGGGCGCACGGATAATGACATAAAGAACTATTGGAACACTAAGCTAAAGAAAAAGCTACTGGGGAAGCAAAGAAAGCTGGAGCAACAAGCTCAAGCTCGCAAAGTTTTTAACCAAAAGCAACAGATCAAGAGAGAGAGTGAAGATTTGATGTTACCTGTTGGAGTTACTACCCGAACTCCTTATTGGCCTGAACAACAATATTCTTGGCCCATTCCAGTGGCAAATAATGCTTCCATCCAATACTCCAATCTCAACAACAATAATCAAACATCATCATTCAGCAAACACTTCCCCAACAACATAGTCACTGCCACCACCATGAATTCACAACACTCATCACGTGACATTTCCTTAACACAAAACCAGTTACATGATTTACACCCCTCCACATTAATGAACATGATAAGCACGGACACGTGTCACACATCAAACGTATTTCAAGGGTTTGTGAAACTTTCCAGTGATTTTCCCTGTGTGAACCAGCAACAAATAGATGGAACAATGCGAGTTTTTTATGGATTGGAAACCATGGACATGGCAACAAATGGTAGCACAAACACTACTTCGACAGAAAGCACTAGTTGGGGAGACATAAACTCTTTGGTTTACTCGCCTTTGTTGGTTTCTGACCACGAAGCTTGTCAACAAAGAATAATAATGCCTCAAGATGTCACTTTTGAGGAATCTAGTTGCTTTGCAATGCAAAGGCAATAA 1008 0.4177 MGRAPCCDKANVKRGPWSPEEDTRLKSYIEEHGTGGNWIALPQKLGLKRCGKSCRLRWLNYLRPNIKHGNFSEEEDNIICSLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKLEQQAQARKVFNQKQQIKRESEDLMLPVGVTTRTPYWPEQQYSWPIPVANNASIQYSNLNNNNQTSSFSKHFPNNIVTATTMNSQHSSRDISLTQNQLHDLHPSTLMNMISTDTCHTSNVFQGFVKLSSDFPCVNQQQIDGTMRVFYGLETMDMATNGSTNTTSTESTSWGDINSLVYSPLLVSDHEACQQRIIMPQDVTFEESSCFAMQRQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01104 335 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma05g01104 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma05g01104 335 SMART sant 13 64 IPR001005 -
Gma05g01104 335 SMART sant 67 115 IPR001005 -
Gma05g01104 335 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma05g01104 335 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma05g01104 335 CDD SANT 16 62 IPR001005 -
Gma05g01104 335 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 314 - -
Gma05g01104 335 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gma05g01104 335 PANTHER OS09G0431300 PROTEIN 1 314 - -
Gma05g01104 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gma05g01104 335 Gene3D - 7 68 - -
Gma05g01104 335 Gene3D - 69 145 - -
Gma05g01104 335 CDD SANT 70 111 IPR001005 -
Gma05g01104 335 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01104 Gma-Chr5 31408260 31409794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01104 1 302 MYB Transcription Factor Family AT3G49690 47.664 2.81e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma05g01104 Myb_DNA-binding 3.9e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01448 17 13761490 13763224 Gma05g01104 05 31408260 31409794 GST
Gma01g01992 01 55373493 55374670 Gma05g01104 05 31408260 31409794 PCT
Gma11g00414 11 3405220 3407155 Gma05g01104 05 31408260 31409794 PCT
Gma05g01104 05 31408260 31409794 Gma01g01992 01 55373493 55374670 PCT
Gma05g01104 05 31408260 31409794 Gma11g00414 11 3405220 3407155 PCT