Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01070 ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCGCTGAAAGCTGGAGTACTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATCTTGCGTATGCGTTCGAATGTGGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTACCAGCCCCCAAAATTGATAATAACCATATGGCCTTGAGTACCATAGTTCGAAATGATGAAGTTCTTGATACTAAGCCCATAGCAGTTTCTGGTGGACCATTGCAATCCCCCAATTTGAAAGAACAAATATCAAGGTTACAGAAGATCAAGTTGGTGGATAATCATATATTAGAGGCCATTGTCAATATGAAGGAGCAGAAGGGTTCTGACAAGGTTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTCACCACCTGATCTCAGTAAATTGCTGTCAACCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAGTCAAGGAAAAGCATAAGTACAGAATTGCGCCAAGTTCAACTGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGAGAAGCCCAAAGATCCTTCAGAAGTACATAAGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGATTTCGAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAGGCTGCAATTGCACaggctgaggcagcagctagggaggctgaggctgcagaagctgaggctgaggctgcTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGGTAG 906 0.4051 MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTIVRNDEVLDTKPIAVSGGPLQSPNLKEQISRLQKIKLVDNHILEAIVNMKEQKGSDKVAIASFIEEKYRSPPDLSKLLSTKLKHMVASGKIVKEKHKYRIAPSSTVSEKRRCSSLVLLEEKPKDPSEVHKNDDVNILSKSQIDAEISKVKGLTAQEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHIW 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01070 301 SUPERFAMILY "Winged helix" DNA-binding domain 129 201 IPR036390 -
Gma05g01070 301 Pfam linker histone H1 and H5 family 132 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma05g01070 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Gma05g01070 301 PANTHER SINGLE MYB HISTONE 4 1 300 IPR044597 GO:0003691
Gma05g01070 301 SMART sant 4 59 IPR001005 -
Gma05g01070 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 123 192 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma05g01070 301 SMART h15plus2 128 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma05g01070 301 CDD SANT_TRF 6 57 - -
Gma05g01070 301 PANTHER MYB TRANSCRIPTION FACTOR 1 300 - -
Gma05g01070 301 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gma05g01070 301 Gene3D - 126 204 IPR036388 -
Gma05g01070 301 Gene3D - 2 59 - -
Gma05g01070 301 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gma05g01070 301 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Gma05g01070 301 Coils Coil 248 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01070 Gma-Chr5 30560957 30564718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01070 1 301 Single Myb Histone (SMH) Gene Family AT5G67580 54.248 7.16e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma05g01070 Linker_histone 3.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01070 K09422 - gmx:100779583 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01479 17 14163542 14173066 Gma05g01070 05 30560957 30564718 GST
Gma01g01975 01 55193175 55200400 Gma05g01070 05 30560957 30564718 PCT
Gma11g00433 11 3588156 3590739 Gma05g01070 05 30560957 30564718 PCT
Gma05g01070 05 30560957 30564718 Gma01g01975 01 55193175 55200400 PCT
Gma05g01070 05 30560957 30564718 Gma11g00433 11 3588156 3590739 PCT