Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01000 ATGGCATACCGAACCCTTCACTCTCTTGCGCTTCCCTTGACTCTTGCTTTGGCCACCAGCTCACGCCCGCACAAGAGCATCACCCGCTTCCGCGACGAGCTCGACGTCGTCCTCGACTACCGCTTCCTTGCCCTGCCACGCCTATTCATTGACGACGACGCTAAGGTCGGCCTCATCGTCGAGGGCCTCCTCTCCCCTTTAATCTCTCTCCTCCTCTCCTCTGCCTCCCCCTCCGACTGTCGCGCCCTCGCCGCCACCCTCCTCACCAGCCTCACTGTCCTCCATGTTAACAAGGCCACCATCGGAGCCTTCCTGGGCTCCATCCATGCCCTCGTGACACTCCTCCGCAATGGAAAGGGAAGGGAAAGAAAAGAAGTTGCCACGATGCTCTACGCCCTCTGCTCCTTCCCTGATAACCGGTGTAAAGCGGTGGAGTGTGGCGCCGTTCCCATTCTGCTTTGGAGCACCGATTCTGGACTTGAGATGAGCGTTGAGGTTATTGGGGTTTTGTCAAAATCCAAAGAGGGGAGGGAGCAGATGGAACGGTTTTGCAGGTGTGTGCAGATTCTTACGCGTGTTTTTCAGGAATGGAAGCTCGAGGGGAGTTCAGGAAATGAGAAAAAGAAGGAAGATTTGGTTAGAGCAGTTTGCCAGCTTGAAGCTTCTATGAGTCAAACTTGCAACTTAACTCCAGAAGGAGCTGGTGGTAAGCTTAGTCATGATATGAAAGCTATTCAGCATCAGCTGCTTTATCATATATGCATTCATACCCGTGATGCAACAGTGAATTTGCAACTGTTAGCGGTTTGGTTCTGCGGTTCAAAAGAGATTGCATGCTATATTGCTATCTACAATACACACAGATCGAAAATGACCAAGGGCATTTGGATAGCCAAGTGTGCTGGGATTGAGCCAAGCACAATTACTATGGATTTAGAGGGCACTGATGGAAGAGAGAGAGGCGAGTCGAATTATGACACTGATTACAGTGCGAAGCCAGGGATCACTCTGGGTTTTGATCAAGAAAACAAAAAGATACAAGGGAAAGGGGGCAAAAAGGTCATTTTGTGGATTTTTTTGGACCTAAGCTCGCCCAAGCTAGCATCTGGCTCGTCTAGACTATGA 1125 0.5058 MAYRTLHSLALPLTLALATSSRPHKSITRFRDELDVVLDYRFLALPRLFIDDDAKVGLIVEGLLSPLISLLLSSASPSDCRALAATLLTSLTVLHVNKATIGAFLGSIHALVTLLRNGKGRERKEVATMLYALCSFPDNRCKAVECGAVPILLWSTDSGLEMSVEVIGVLSKSKEGREQMERFCRCVQILTRVFQEWKLEGSSGNEKKKEDLVRAVCQLEASMSQTCNLTPEGAGGKLSHDMKAIQHQLLYHICIHTRDATVNLQLLAVWFCGSKEIACYIAIYNTHRSKMTKGIWIAKCAGIEPSTITMDLEGTDGRERGESNYDTDYSAKPGITLGFDQENKKIQGKGGKKVILWIFLDLSSPKLASGSSRL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01000 374 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 285 324 - -
Gma05g01000 374 Gene3D - 30 252 IPR011989 -
Gma05g01000 374 PANTHER U BOX DOMAIN-CONTAINING 37 200 - -
Gma05g01000 374 SUPERFAMILY ARM repeat 50 219 IPR016024 -
Gma05g01000 374 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 37 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01000 Gma-Chr5 28976793 28983037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01000 51 201 U-box Gene Family AT4G21350 54.305 1.46e-46 161