Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00974 ATGGACCGGATCAAGGGCCCGTGGAGCCCGGAGGAGGACGAGGCCCTTCAGAAGCTTGTGGAGCGGCACGGGCCCAGAAACTGGTCGCTCATCAGCAGGTCCATTCCGGGCCGGTCTGGGAAGTCATGCAGGCTTCGGTGGTGCAACCAGCTGTCGCCCCAGGTCGAGCACCGGGCCTTCACACCGGAAGAGGACGAGACCATTATTCGGGCCCATGCCCGGTTTGGTAACAAGTGGGCCACCATTGCGCGCCTCCTCTCGGGCCGCACCGATAACGCCATCAAGAATCACTGGAACTCAACCCTAAAACGCAAGTGCGCGTCCTTCATGATGGCGGGTGATGAAGCCGTCGCCGTGAGTCCGAGGCCGCTCAAGCGATCCTTCAGCGCCGGCGCGGCGGTGCCTCCTCCCGGAAGCCCCTCCGGATCCGATTTCAGCGAGTCCAGCGCTCCCGGCGTGGTCTCGGTCTCTCCTTCGCACGTGTTTCGCCCCGTGCCGGTTCGGCCGATTGTTGAAACGGCGTCGTCGCAAGACGATGCCGACGATGCCGGACCCGCGACTTCGCTGTCGCTGTCTCTTCCCGGTGTGGAGTCGGCGGAAATTTCAAATCGCGCAACTACGGTGCCGGTGATGCCGGTGAATACCGTTGCGGCTCCGGCACCGGTTCCGGCGGAGGTTGGATTGGGAGCGTTGAATTTGAGTGGAGAGTTTATGGCGGTGATGCATGAGATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCAGAAGAATGGGATGATGTGTTTTCAGGGTATGGAAATGATGGAAGGGTTTAGGAACGTGTCGGTGAAGCGAATTGGGATTAGCAGGGTGGATTCGTAA 864 0.6042 MDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFMMAGDEAVAVSPRPLKRSFSAGAAVPPPGSPSGSDFSESSAPGVVSVSPSHVFRPVPVRPIVETASSQDDADDAGPATSLSLSLPGVESAEISNRATTVPVMPVNTVAAPAPVPAEVGLGALNLSGEFMAVMHEMIRKEVRSYMEQQKNGMMCFQGMEMMEGFRNVSVKRIGISRVDS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00974 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Gma05g00974 287 MobiDBLite consensus disorder prediction 141 155 - -
Gma05g00974 287 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Gma05g00974 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Gma05g00974 287 PANTHER MYB PROTEIN-RELATED 2 256 - -
Gma05g00974 287 CDD SANT 7 49 IPR001005 -
Gma05g00974 287 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Gma05g00974 287 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Gma05g00974 287 Gene3D - 58 116 - -
Gma05g00974 287 CDD SANT 59 102 IPR001005 -
Gma05g00974 287 PANTHER MYB TRANSCRIPTION FACTOR 2 256 - -
Gma05g00974 287 SMART sant 56 104 IPR001005 -
Gma05g00974 287 SMART sant 4 53 IPR001005 -
Gma05g00974 287 Gene3D - 4 56 - -
Gma05g00974 287 MobiDBLite consensus disorder prediction 129 155 - -
Gma05g00974 287 Pfam Myb-like DNA-binding domain 8 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00974 Gma-Chr5 28455688 28456551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00974 1 286 MYB Transcription Factor Family AT4G37260 49.074 7.15e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma05g00974 Myb_DNA-bind_6 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00974 K09422 - gmx:100806145 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01543 17 15564381 15566159 Gma05g00974 05 28455688 28456551 GST
Gma05g00974 05 28455688 28456551 Gma01g01931 01 54812643 54814057 PCT
Gma05g00974 05 28455688 28456551 Gma11g00475 11 3966831 3968100 PCT