Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00964 ATGTTGGAAAGTTATTCAGGAGTCATTAACTTGCAATTTTCTGTGCTTGGCCAATTGTTGTTGCAGTGTCCACCATTTCGGTTAAGCTACCAGGGGCTGGGAGAGCCCTTGTGCTTTGCAGCATTTGGGCCTTTTGCCACTTGTGCTTTTTATTTATTACATGGCAGTTCAAGTGTGATGAACCATTTCCCCTTAAGTGGAACGGTTCTTTCAGCATCAATTCTTGTTGGCTTCACAACATCTCTTATCTTGTTTTGCAGTCATTTCCATCAGGTGGAAGGAGACAGGGAGGTTGGGAAAATGTCACCTTTGGTTAGACTTGGCACTAAAAAAGGTGCAGAGGTAGTGAAAGGGGCAATCTTTATGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAATCAAGGCACTTCCTCTCACTTGTATATTCCTTTGTGCATTGACCTTGCCGATGGGAAACCTAGTAGTTAGATTTGTCGAAGACAATTACAAGGCAAGACTAGTGCTGGCTCGAAAGAGTGTGGATGACCCTGGAAGACCCCCTGGCATTGTTCTTAGTGCTGCCATTTCTTTTTGGCTTCCTGTTCCTCCTAAACGAGTCTTTGACTTCCTTCGTGATGAAAACTCTAGGAATGAGATTGACATTATTGTTTTCATGGTTTATTACTTAATGGTATTCTCTTTACTCAATGTAGTTATTGCGGTTCCGGATGGATTAAAGGCATGGGAAATGTTGAAGAAGAAGGCACCTGAGCTAGATCTCATATTAACAGAAGTGGAGCTACCAGCAATATCTGGATTTGCTCTTTTTTCTTTAATCATGGAGCATGACATTTGTAAAAGAATTCTTGTCATAATGATGTCTTCTCATGATTCGGTTAACATGGCATTGAAATGCATGTTAAACGGGGCAATTGATTTTCTTATAAAACCCATTTGCAAGAATGAGCTTAGGAACTTGTGGCAACATATTAGCACTCCTACTCAAAATACAACATTTTCACCGAAAAAACTTAAAACTGCCTCAGAAGACAATTCTGCAAGCAATAAATCTAATGGTTCTATGGCTTCCTCAAAGAAAAACAATGAATGCAGCGAGAGATTAAGTGAGGCTCAAAGCACTTGTACATCACCAATTATGGAAGCTAAGAGTGTGGATTCTAGACACAAATGGTCAGTCAAGCCCGGAGCACTACGGATTCCAGACAGAATCAGAGATGGCATCTCCATCTTCGGGCCGAAGGACATATGGATCGACCACTACACCCTTTCACGGTGCAAGGACGGTCTGATCGACGCGGTGATGGGGTCCATAGGGATAACCATCTCCAACAACATGCTCTCCCACCACAACGAGGTCATGCTACTCGGACACAACGACGACTACCTCCCTGACTCCGGAATGCAGGTCACCATCGCCTTCAACCACTTCGGGGAGAAGCTCGTCCAGCGCATGCCCCGCTGTCGAAGGGGATACATCCACGTCATCAACAACGACTTCACCGAGTGGGAGATGTACGCCATTGGTGGCAGCGGCGAGCCCACCATTAACAGCCAGGGTAACCGTTACATGGCACCGGAAAATCCCTTCGCTAAGGAAGTTACTAAGAGAGTCAACACGCAACAGTCCAAGTGGAAGGGATGGAACTGGCGCTCCCAGGGTGACATTCTCCTCAACGGGGCCTTTTTTGTTGCGTCTGGTGAAGAACTTGAAGTCAAGTATGAGAAGACATACATCGTCCAAGGACTATTTTGTAAAATTGCCAAAATTGGCATGGTCATAATttag 1785 0.4448 MLESYSGVINLQFSVLGQLLLQCPPFRLSYQGLGEPLCFAAFGPFATCAFYLLHGSSSVMNHFPLSGTVLSASILVGFTTSLILFCSHFHQVEGDREVGKMSPLVRLGTKKGAEVVKGAIFMLYALLVAFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKARLVLARKSVDDPGRPPGIVLSAAISFWLPVPPKRVFDFLRDENSRNEIDIIVFMVYYLMVFSLLNVVIAVPDGLKAWEMLKKKAPELDLILTEVELPAISGFALFSLIMEHDICKRILVIMMSSHDSVNMALKCMLNGAIDFLIKPICKNELRNLWQHISTPTQNTTFSPKKLKTASEDNSASNKSNGSMASSKKNNECSERLSEAQSTCTSPIMEAKSVDSRHKWSVKPGALRIPDRIRDGISIFGPKDIWIDHYTLSRCKDGLIDAVMGSIGITISNNMLSHHNEVMLLGHNDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVINNDFTEWEMYAIGGSGEPTINSQGNRYMAPENPFAKEVTKRVNTQQSKWKGWNWRSQGDILLNGAFFVASGEELEVKYEKTYIVQGLFCKIAKIGMVII 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00964 594 Pfam Response regulator receiver domain 229 318 IPR001789 GO:0000160
Gma05g00964 594 PRINTS Pollen allergen Amb family signature 547 571 IPR018082 -
Gma05g00964 594 PRINTS Pollen allergen Amb family signature 403 424 IPR018082 -
Gma05g00964 594 PRINTS Pollen allergen Amb family signature 505 524 IPR018082 -
Gma05g00964 594 PRINTS Pollen allergen Amb family signature 483 502 IPR018082 -
Gma05g00964 594 SUPERFAMILY CheY-like 213 323 IPR011006 -
Gma05g00964 594 PANTHER PECTATE LYASE 12-RELATED 404 580 - -
Gma05g00964 594 SMART REC_2 212 320 IPR001789 GO:0000160
Gma05g00964 594 SMART amb_all 332 528 IPR002022 -
Gma05g00964 594 Gene3D - 391 583 IPR012334 -
Gma05g00964 594 Pfam UbiA prenyltransferase family 25 151 IPR000537 GO:0016021|GO:0016765
Gma05g00964 594 ProSiteProfiles Response regulatory domain profile. 198 324 IPR001789 GO:0000160
Gma05g00964 594 CDD PT_UbiA_UBIAD1 24 171 IPR026046 GO:0004659
Gma05g00964 594 Pfam Pectate lyase 415 515 IPR002022 -
Gma05g00964 594 MobiDBLite consensus disorder prediction 328 371 - -
Gma05g00964 594 SUPERFAMILY Pectin lyase-like 405 567 IPR011050 -
Gma05g00964 594 Gene3D - 225 390 - -
Gma05g00964 594 PANTHER PECTATE LYASE 18-RELATED 404 580 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00964 Gma-Chr5 28110185 28114757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00964 405 580 Polysaccharide Lyase AT3G53190 83.523 4.05e-105 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma05g00964 UbiA 2.9e-09 CL0613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00964 K01728 K23094 gmx:100813101 372.474