Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00959 ATGGCTCTCGGCGACGATGCGCAGCACCACTCTCACTCTCCCTCGTTCCTCGATTCCCTTCTCTGCGAAGAGCGAGAAACGTTCGAGGAAGACTTTGACGCGAACGGTGACGAGTGCGAGACCGAAAACAACGACCCCTCTGTGATAAAGTCGCAACCTTTGCCCTTGGTTTTGTACGACAATGACCTGTTCTGGGAAGACGACGAGCTCGTGTCGTTAATCGCGAAAGAGGGAGAGACCCATTTGCGTTCTTTTTCTGATGGGGCCCTGGAAGGGCCTCGTGTTGAAGCTGTGAACTGGGTTTCGAAAGTTTCTGGGCACTATGGGTTCTCTGCTTTGACCACTGTTCTTGCTGTTAACTACTTCGATAGGTTCATCACAAGTTTGAAGTTTCAGAGGGACAAGCCGTGGATGACACAGCTCGCTGCTGTTGCTTGTTTGTCCCTTGCTGCGAAAACAGAAGAGACCCATGTGCCACTCCTCTTGGACCTTCAAGTGGAGGAGTCAAGGTTTGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCAACTCTTAAGTGGAGGATGCTTCCGGTGACCCCAATTTCCTTCTTTGAACACATTGTGAGAAGGCTTGGTTTGAAAAGTCGCTTGCATTGGGAGTTTCTGTGGCGTTGTGAGCGGGTTCTTCTCAATATCATTGCGGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCGACAATGATCCATGTTATTAAAGAAATTGAATCATTTAATGCGACTGAGTACATTGATCAGCTTCTGGGTTTACTAAAGATTAGCGAGGAACAAGTGAACAAGTGCTACAGAATCATACAGAAACTATTAGGTTGCCATGAAGGCATTTACGGCCTTCCCCAGAAATGCAAGCGACTATCTGAATTGGGTAGCCCGAGTGCTGTTACTGATGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGGCCGTGTCATCATCAGTCTCACTTTCACTGGAGCCGCAGTTGAAGAGGAGAAGATCTCAGGACCAGCAAATGCGATTGCCTTCTGTTAGTCGTGTGTCAATTGATGTTCTTAATAGCCCTCATTAA 1113 0.4735 MALGDDAQHHSHSPSFLDSLLCEERETFEEDFDANGDECETENNDPSVIKSQPLPLVLYDNDLFWEDDELVSLIAKEGETHLRSFSDGALEGPRVEAVNWVSKVSGHYGFSALTTVLAVNYFDRFITSLKFQRDKPWMTQLAAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMLPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNIIADSRVMSYLPSTLAAATMIHVIKEIESFNATEYIDQLLGLLKISEEQVNKCYRIIQKLLGCHEGIYGLPQKCKRLSELGSPSAVTDASFSCDSSNDSWAVSSSVSLSLEPQLKRRRSQDQQMRLPSVSRVSIDVLNSPH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00959 370 CDD CYCLIN 94 186 IPR013763 -
Gma05g00959 370 Pfam Cyclin, C-terminal domain 196 291 IPR004367 -
Gma05g00959 370 SMART cyclin_7 99 187 IPR013763 -
Gma05g00959 370 PANTHER CYCLINS 6 353 IPR039361 -
Gma05g00959 370 Gene3D - 195 284 - -
Gma05g00959 370 SUPERFAMILY Cyclin-like 197 292 IPR036915 -
Gma05g00959 370 PANTHER CYCLIN-D3-2 6 353 - -
Gma05g00959 370 Pfam Cyclin, N-terminal domain 94 193 IPR006671 -
Gma05g00959 370 SUPERFAMILY Cyclin-like 65 193 IPR036915 -
Gma05g00959 370 Gene3D - 94 194 - -
Gma05g00959 370 SMART Cyclin_C_2 196 323 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00959 Gma-Chr5 27991145 27992594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00959 1 360 Core Cell Cycle Gene Families AT5G67260 53.333 1.05e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00959 K14505 - gmx:100805075 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01549 17 15735804 15737772 Gma05g00959 05 27991145 27992594 GST
Gma05g00959 05 27991145 27992594 Gma01g01926 01 54777639 54778932 PCT
Gma05g00959 05 27991145 27992594 Gma11g00479 11 4013612 4015682 PCT