Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00897 ATGGATTGGGTTCGAGGAGACGCCCTCGGGCGAGGAAGCTTCGCTACCGTTAGTTTAGCGATTCCGACTACAAATCCGAATCAGTTTCCGTCTCTAACCGCCGTTAAGTCCGCGGAGGCTCAAACCTCGTGCTGGCTAAGAAACGAGAAACACGTGCTGGATCGCCTAGGTTCGTCGTCTCCGAGGATAATTCGCTGCTTCGGAGACGACTGCAGTTTCGAGAACGGCGTTGAGTACTACAATCTGTTCCTCGAATACGCCGCCGGCGGGAGCCTTGCCGATGAATTGAAGAATCACGATGGCCAGATTTCCGAGCATGAGGCTCGGGAATACACGAGGGCCATCGTGGAGGGTCTGAGCCACGTGCACAAAAGCGGGTTTGTTCACTGCGACATAAAGCTGCAGAACATCCTCGTATTCGGGGACGGAGGTATCAAAATTGCGGATTTCGGGCTTGCGAGGGAGGCAGGGCAGAAACAGGAGAAGAGTGAATGCAGGGGGACTCCGATGTTTATGTCGCCGGAGCAAGCGACCGGCGGCGAGTGCGAATCGCCGGCCGATATATGGGCTTTGGGATGTACAATTGTGGAGATGGTGACCGGGAAACCGGCGTGGCAGGTGGAGAAGGGGGCGAGCATGTGGTCGCTGTTGCTTCGAATTGGGGTGGGAGAAGAGGTTCCCGAGATCCCTAATAATTTGTCCGAAGATGGAAAAGATTTTATTGAAAAATGTTTTATTAAGGATCCTAAGAAGAGGTGGAGCGCAGAAATGCTATTGAAACACCCTTTTCTTATTAATGATGGCACTGTTCCATTTAAGCGCGTTCATGAGTCGCCGAGAAGCCACTTTGATTTCCCCGATTGGGTTTCTAGCGTGACGAATTCGCTTCCCAGTTCGCCGGAATTTCAAGACAAGTGGGATTTTGATGACGGGTTCTGTTCGCCGGAGGACCGGCTCCGGCAGCTTTTGACGGTTAATCGGCCGGCGAGTTGGTCAGAATCGGATGGGTGGAGTAGTGTTAGGTGA 1026 0.5292 MDWVRGDALGRGSFATVSLAIPTTNPNQFPSLTAVKSAEAQTSCWLRNEKHVLDRLGSSSPRIIRCFGDDCSFENGVEYYNLFLEYAAGGSLADELKNHDGQISEHEAREYTRAIVEGLSHVHKSGFVHCDIKLQNILVFGDGGIKIADFGLAREAGQKQEKSECRGTPMFMSPEQATGGECESPADIWALGCTIVEMVTGKPAWQVEKGASMWSLLLRIGVGEEVPEIPNNLSEDGKDFIEKCFIKDPKKRWSAEMLLKHPFLINDGTVPFKRVHESPRSHFDFPDWVSSVTNSLPSSPEFQDKWDFDDGFCSPEDRLRQLLTVNRPASWSESDGWSSVR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00897 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Gma05g00897 341 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00897 341 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Gma05g00897 341 SUPERFAMILY Protein kinase-like (PK-like) 3 298 IPR011009 -
Gma05g00897 341 Gene3D Transferase(Phosphotransferase) domain 1 2 305 - -
Gma05g00897 341 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00897 341 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 295 - -
Gma05g00897 341 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 295 - -
Gma05g00897 341 CDD STKc_MAPKKK 2 264 - -
Gma05g00897 341 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00897 Gma-Chr5 22333246 22334605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00897 1 341 MAP Kinase Kinase Kinase AT4G36950 51.873 1.60e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma05g00897 Pkinase 3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00897 - - gmx:100799752 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01602 17 18251387 18252811 Gma05g00897 05 22333246 22334605 GST
Gma01g01899 01 54531189 54532229 Gma05g00897 05 22333246 22334605 PCT
Gma11g00505 11 4215650 4217092 Gma05g00897 05 22333246 22334605 PCT
Gma05g00897 05 22333246 22334605 Gma01g01899 01 54531189 54532229 PCT
Gma05g00897 05 22333246 22334605 Gma11g00505 11 4215650 4217092 PCT