Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00878 ATGTCACCATTAAAAGGGGTTCTCTTCTATGGTCCTCCAGGATGTGGAAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAATTTCATCAGTGTGAGGGGCCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCAGCTCCATGTGTCCTCTTTGATGAGCTTGATTCCATTGCTACTCAGGATATCAGAAGAGAGCTTGGAATGGAAATAATTGAGGAACATACGGTGATGGAATATTCTAAGGTCAGCAAGAAATGTGAAAAATGTGGCCATAGGGAAGCTACCTATTATACTAGATAG 351 0.4103 MSPLKGVLFYGPPGCGKTLLAKAIANECQANFISVRGPELLTMWFGESEANVREIFDKARQSAPCVLFDELDSIATQDIRRELGMEIIEEHTVMEYSKVSKKCEKCGHREATYYTR 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00878 116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 77 IPR027417 -
Gma05g00878 116 Gene3D - 2 87 IPR027417 -
Gma05g00878 116 SMART AAA_5 3 98 IPR003593 -
Gma05g00878 116 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG D 1 78 - -
Gma05g00878 116 CDD AAA 3 94 - -
Gma05g00878 116 Pfam ATPase family associated with various cellular activities (AAA) 7 78 IPR003959 GO:0005524|GO:0016887
Gma05g00878 116 PANTHER AAA-FAMILY ATPASE 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00878 Gma-Chr5 20392529 20395158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00878 1 87 Calmodulin-binding Proteins AT3G56690 46.591 3.91e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00878 K13525 - sind:105174282 151.754