Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00872 ATGTGTATGCACTTAGGCTTGCTTCTTGGTGTGGGTAGCCACATGCAGGAGCTTAGGAGGGTCAGGTCTAGGATCATGGGGGAGAAGGATAACATGGCCACCATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGACTTATTTGAGGAAGGTTGTTATGCCCTTGGAGATTCTTCTACTAGCTATAAGAGGCTTGTTGTCAAGGATTTTGCTGTCAATGCTATTTGTTTTGGTGCTAAGTTCATGA 264 0.4394 MCMHLGLLLGVGSHMQELRRVRSRIMGEKDNMATMHDVMDAQWVYDNYRDETYLRKVVMPLEILLLAIRGLLSRILLSMLFVLVLSS 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00872 87 Pfam tRNA pseudouridylate synthase B C-terminal domain 1 65 IPR032819 -
Gma05g00872 87 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 1 71 IPR004802 GO:0006396
Gma05g00872 87 Gene3D Pseudouridine synthase 1 60 - -
Gma05g00872 87 PANTHER BNAA02G21770D PROTEIN 1 71 - -
Gma05g00872 87 SUPERFAMILY Pseudouridine synthase 1 65 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00872 Gma-Chr5 19839157 19839420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00872 1 74 NAC Transcription Factor Family AT3G57150 70.270 1.86e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00872 K11131 - gmx:100780706 119.783