Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00871 ATGGCACGTGTTGCTGATAAAATAAAATTGATAGATGGATCAAGGGAAACTCTTAAGCTTTCTGTAAGGATCATTGATCTTTGGTTCATTGGGATTCCCGGAAAGACTGAACAAGCCGAAATGGTGGTTGTTGATTCTGATGGAGACGAAATCCATGTTGTTTGCAAGCAGGATCAGCTGAAGTCTCGCAAGGCTGATTTGAAAGAAAATTTGACTTATGTGATGCATAATTTTAAAGTTATCAAGAATGATGGGAAATTAAAAAATTGTGATCATGAATATAAATTATGTTTTATTGGAGTTACTGTTGTTAGGAAATGTGATATGGAACAGTTACCTTTTAGGAAATTCAGATTTTTTGCTTTTTCCAGTGTCATTGCTGGTCATTTTAAAATTGGACTCTTGGTTGATGTTATTGGCGTGGTTGATGAAGTATTATTCCGATATGTGTCATCCAAAAATACGAGGGTTGTTTTGAATTTAAAGGATTTGAGTGGACAGGTGCTATCCTGTACACTATGGGAAAATTACTGCTTACAGTTTTTGTCTTATTTGAATGATATTGAAGATGAAAGGCCGATCGTTATTCTCTTGACTCATGCTAGGATTAAGGAAGCACAGGGATCATATCCGGCATCGGTCAGTAATTCTTTCAAGGCATCTAAACTCATGATCAATGACCTCGTGCTTGAAATTCAAGAATTTAGAGAGAGTCTTTTAGATTTAGGGATCGAGTTCAGAGGAGTTTGTTTGTGTTACTGTCGCCAAGATTACAACCATAGTTATGGACAACTATTCATGGTGCTATCTGGCTTGTGGTCAATGTTAAAAAAAGCTGACATGCAAACTGTGCCTTTCACATGTCCGTGTGACAAAGAGAATGATCAACCTGTACTGAGGTATCGGGTTGAGGTGATGGTTAATCACAAGGGTGAACAAACCAAATTTTTGATCTGGGATCGTGAATGTGCACAGTTAATTGGTCAGTCAACGGATGAAGTCAACAGGCTCATAATAGAAGATGGGGATGCTGATTTAAATGCCTCTCCTCAAGCGCTAGATAGGCTATTGGGTTGTTTCCTTGCATTCAAAGTGAAGGTGCAACCAAGGTTCAGGAATTCTGTTGTTCTTAAATATTCAAATGAATTAGACTTGATCAATGTTGTGCTAGATATGATTCCCGATAGTGAGCCATGTTGCAAGATCGAGAATTCAATACTTGATTCGACTGATCCTACAGTGCTTGAATCTGTGAGCTAA 1260 0.3794 MARVADKIKLIDGSRETLKLSVRIIDLWFIGIPGKTEQAEMVVVDSDGDEIHVVCKQDQLKSRKADLKENLTYVMHNFKVIKNDGKLKNCDHEYKLCFIGVTVVRKCDMEQLPFRKFRFFAFSSVIAGHFKIGLLVDVIGVVDEVLFRYVSSKNTRVVLNLKDLSGQVLSCTLWENYCLQFLSYLNDIEDERPIVILLTHARIKEAQGSYPASVSNSFKASKLMINDLVLEIQEFRESLLDLGIEFRGVCLCYCRQDYNHSYGQLFMVLSGLWSMLKKADMQTVPFTCPCDKENDQPVLRYRVEVMVNHKGEQTKFLIWDRECAQLIGQSTDEVNRLIIEDGDADLNASPQALDRLLGCFLAFKVKVQPRFRNSVVLKYSNELDLINVVLDMIPDSEPCCKIENSILDSTDPTVLESVS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00871 419 CDD RPA1_DBD_B_like 137 239 - -
Gma05g00871 419 SUPERFAMILY Nucleic acid-binding proteins 19 107 IPR012340 -
Gma05g00871 419 Pfam Domain of unknown function DUF223 40 127 IPR003871 -
Gma05g00871 419 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 334 - -
Gma05g00871 419 SUPERFAMILY Nucleic acid-binding proteins 290 374 IPR012340 -
Gma05g00871 419 Gene3D - 111 243 IPR012340 -
Gma05g00871 419 SUPERFAMILY Nucleic acid-binding proteins 119 239 IPR012340 -
Gma05g00871 419 Gene3D - 4 107 IPR012340 -
Gma05g00871 419 Gene3D - 274 386 IPR012340 -
Gma05g00871 419 PANTHER REPLICATION FACTOR A 1, RFA1 11 334 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma05g00871 419 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00871 Gma-Chr5 19802514 19804666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00871 43 243 Core DNA Replication Machinery Family AT2G06510 25.118 1.35e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00871 - - gsj:114401925 687.567