Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00830 ATGTCGTCGTCCTCGAATTCGCCGTGTGCGGGGTGCAAGCTCCTGCGGCGGAAGTGCACACAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCACAGCGGTTCGCGTGCGTGCACCGCGTGTTCGGCGCGAGCAACGTGTCAAAGCTGCTGAGCGAGCTCAGCGTGGCGCAGCGGGACGACGCCGTCAAGTCGCTGGCGTACGAGGCGGAGGCGTGTCTGCGCGACCCCGTCTACGGTTGCGTGGGCTTCATCTCGCTCCTGCAGCAGCACCTCCGTCAAATCCAGACGGAGCTCCACAACGCGAAGAAGGAGTTGGCAAGGTACCCTAGCCCCCAGGCCATGCAGGTTCTTTTAGCCAATCCAGGGATGTTGCAACATGGTGGTATTGTTGTGCCTCATTTACATCAACCAGTGTTCAACGCTCTGTCCAACCAGATGGTTGGACAGAACGTTGGACAGCAGGAGTTTCTAGAAACTCAGCAAATGTTTCTCGCAAATAGGGATCATCAACATCAGCAGCAACAGCAACAACAACATGTTATGCTTCGGAGCTACGAACAGCAAGAGTTTATGAAGTTTAATAATGGTGTGTTTGAGCCTAGTGTTGGTGGAGGGTTTGGGAACCAAGCGGAGGAGTTCTTGTCTCCTTCCTTGGCTCTTGGAAATTTCGAGAATGTTGAGTCTTACCAGATGCAACAGCAAGGGGAACAACATCATCCCATTGAGGCGCAGTTGCTCCTCTCGCCACAGCAAGAGTCACAAGGACAACATCAGCAACAACAGTGTGCAAGTGAGGATGGGAGGAATGTTGTTCCTGCTTGA 831 0.5439 MSSSSNSPCAGCKLLRRKCTQECVFAPYFPPDNPQRFACVHRVFGASNVSKLLSELSVAQRDDAVKSLAYEAEACLRDPVYGCVGFISLLQQHLRQIQTELHNAKKELARYPSPQAMQVLLANPGMLQHGGIVVPHLHQPVFNALSNQMVGQNVGQQEFLETQQMFLANRDHQHQQQQQQQHVMLRSYEQQEFMKFNNGVFEPSVGGGFGNQAEEFLSPSLALGNFENVESYQMQQQGEQHHPIEAQLLLSPQQESQGQHQQQQCASEDGRNVVPA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00830 276 Coils Coil 87 107 - -
Gma05g00830 276 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Gma05g00830 276 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 259 - -
Gma05g00830 276 MobiDBLite consensus disorder prediction 251 269 - -
Gma05g00830 276 MobiDBLite consensus disorder prediction 251 276 - -
Gma05g00830 276 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 1 259 - -
Gma05g00830 276 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00830 Gma-Chr5 16337879 16338709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00830 3 121 AS2 family AT5G66870 72.269 4.24e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma05g00830 LOB 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00830 - - gmx:100796406 535.028