Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00788 ATGGACAGGCTCATAAGGTTAGACCCTTCAAACACAGTCCTAATCAGGGTTGAGCCAGGGCAAAAGTGCCACGGCAGGATCACCTTACACAACGTGATGTACACAATGCCAGTGGCCTTCAGGCTTCAACCACTCATCAAGACCCGTTACACAGTGAAGCCCCAATCAGGGATCATATCCCCTTTAGCCACACTTACCATAGACATCACCTACCATCTCCCACAAGGCTCGTCTCTCCCCCACTCTTTCCCTCACTCGAACGACTCTTTCCTCTTACACAGCGTTTTGGTTCCCGGCGCCGCCATCAAGGAACCCTCCTCCATGTTCGATGCTGTCCCCAGTGACTTGTTCAAGAAGAAACAGGTCTTCATCGACAGCGCCATCAGGGTCATGTTTGTGGGGCCTCACATTCTGGCTCGGCTAGTAACACAAGGTGCAACGGATGAAATAAGAGAAGTTTTAGAGAAAAGTGACCCATCATGGAGAAATGTTAACTCGACAGACCCACAAGGCCAAACGTTGCTCCACTTGGCGATTTCGCAAGGTAGAGCTGATCTCGTTCAGTTGCTCCTAGAATTCGAGGCTGACGTCGAAGCCTTAAACCGTTCTGGCTCAACCCCACTTGAGGCTGCATCGTCCTGCAACGAAGCCTTAATTGTTGAGCTTCTTTTGGCCCACAAAGCCAACACAGAACGGTCGGAATTGTCCATGTTCGGTCCGATCCACCACGCAGCCAGAGGAGGACACGTGGAGGTTATGAGACTTCTCTTGCTCAAAGGTGCCAAAGTGGATTCACTCGCTAAAGATGGCAACACAGCCTTGCACGTTGCAGTTGAAGAGCACACAAAGGACTGTGTTAGACTCCTTCTGGCAAACGGTGCCAGAACAGACGCTAAAAATACAAGAGAAGGTGACACGCCTTTGCACGTGGCATCAGCAATAGGAGATGAGAGCATGGTGAAGCTCTTGCTGCAAAAGGGTGGTGCCAACAAAGACGTGAGAAACAGACAAGGGAGAACCGCGTATGATATTGCAGTGGAAAACGGCCATGCACACCTCTACGACGCCTTGTGTTTGGGGGACAAACTGTGCGTGGCAGCAAGGAAAGGGGAAGTGAGGAGCATCCACAAGCTTCTAGAGAATGGTGCAGGGATCAATGGGAGGGACCAAAATGGTTGGACATCGCTGCACAGGGCCTCGTTCAAAGGGAGAATCGACACTGTGAAGCTTCTTGTAGAGAAGGGGGCGGAGGTGGATGCAAAGGACGAAGAAGGGTACACGGCGTTGCACTGTGCTGCTGAGTCGGGGCATGCTGACGTGACTGAGTTTTTGGTGAAGAGAGGTGCTGATGTTGAAGCCAGGACTAGGAAGGGTGTGAGTGCGTTGCAAATAGCTGAGTCGTTGCACTACGTGGGGATTACGAGGGTTCTTGTTAATGGTGGGGCCAGTAGGGAAAATTGTGATGTGGGTAAAGTGGCGGCACTTGGTGCAATTGCGTTTGGGACTAAAATGGAAGCTAGGGGTGTCATGAATAAAAAGAAGAGGGGTGGTGGTGGCAGAGCCAGAATGCTAAATGGTGCTAGCTTTGATCGTTCAATGGCTCTGGCTGTGCTCTAA 1617 0.5121 MDRLIRLDPSNTVLIRVEPGQKCHGRITLHNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATLTIDITYHLPQGSSLPHSFPHSNDSFLLHSVLVPGAAIKEPSSMFDAVPSDLFKKKQVFIDSAIRVMFVGPHILARLVTQGATDEIREVLEKSDPSWRNVNSTDPQGQTLLHLAISQGRADLVQLLLEFEADVEALNRSGSTPLEAASSCNEALIVELLLAHKANTERSELSMFGPIHHAARGGHVEVMRLLLLKGAKVDSLAKDGNTALHVAVEEHTKDCVRLLLANGARTDAKNTREGDTPLHVASAIGDESMVKLLLQKGGANKDVRNRQGRTAYDIAVENGHAHLYDALCLGDKLCVAARKGEVRSIHKLLENGAGINGRDQNGWTSLHRASFKGRIDTVKLLVEKGAEVDAKDEEGYTALHCAAESGHADVTEFLVKRGADVEARTRKGVSALQIAESLHYVGITRVLVNGGASRENCDVGKVAALGAIAFGTKMEARGVMNKKKRGGGGRARMLNGASFDRSMALAVL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00788 538 Pfam Ankyrin repeats (many copies) 402 445 IPR002110 GO:0005515
Gma05g00788 538 SMART ANK_2a 424 453 IPR002110 GO:0005515
Gma05g00788 538 SMART ANK_2a 170 199 IPR002110 GO:0005515
Gma05g00788 538 SMART ANK_2a 303 333 IPR002110 GO:0005515
Gma05g00788 538 SMART ANK_2a 337 366 IPR002110 GO:0005515
Gma05g00788 538 SMART ANK_2a 457 489 IPR002110 GO:0005515
Gma05g00788 538 SMART ANK_2a 203 232 IPR002110 GO:0005515
Gma05g00788 538 SMART ANK_2a 236 265 IPR002110 GO:0005515
Gma05g00788 538 SMART ANK_2a 269 298 IPR002110 GO:0005515
Gma05g00788 538 SMART ANK_2a 391 420 IPR002110 GO:0005515
Gma05g00788 538 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Gma05g00788 538 Gene3D - 308 357 IPR036770 -
Gma05g00788 538 Gene3D Immunoglobulins 1 121 IPR013783 -
Gma05g00788 538 ProSiteProfiles Ankyrin repeat profile. 303 327 IPR002110 GO:0005515
Gma05g00788 538 SUPERFAMILY PapD-like 2 143 IPR008962 -
Gma05g00788 538 Pfam Ankyrin repeats (many copies) 163 209 IPR002110 GO:0005515
Gma05g00788 538 Pfam Ankyrin repeats (many copies) 301 345 IPR002110 GO:0005515
Gma05g00788 538 Gene3D - 122 233 IPR036770 -
Gma05g00788 538 Pfam Ankyrin repeats (3 copies) 240 299 IPR002110 GO:0005515
Gma05g00788 538 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 133 IPR000535 -
Gma05g00788 538 ProSiteProfiles Ankyrin repeat profile. 424 456 IPR002110 GO:0005515
Gma05g00788 538 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Gma05g00788 538 SUPERFAMILY Ankyrin repeat 163 500 IPR036770 -
Gma05g00788 538 ProSiteProfiles Ankyrin repeat region circular profile. 170 202 - -
Gma05g00788 538 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Gma05g00788 538 ProSiteProfiles Ankyrin repeat region circular profile. 269 300 - -
Gma05g00788 538 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 538 - -
Gma05g00788 538 PRINTS Ankyrin repeat signature 304 319 IPR002110 GO:0005515
Gma05g00788 538 PRINTS Ankyrin repeat signature 407 421 IPR002110 GO:0005515
Gma05g00788 538 ProSiteProfiles Ankyrin repeat region circular profile. 236 264 - -
Gma05g00788 538 Gene3D - 234 307 IPR036770 -
Gma05g00788 538 Gene3D - 358 513 IPR036770 -
Gma05g00788 538 ProSiteProfiles Ankyrin repeat region circular profile. 424 456 - -
Gma05g00788 538 ProSiteProfiles Ankyrin repeat region circular profile. 303 327 - -
Gma05g00788 538 ProSiteProfiles Ankyrin repeat profile. 236 268 IPR002110 GO:0005515
Gma05g00788 538 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 538 - -
Gma05g00788 538 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Gma05g00788 538 ProSiteProfiles Ankyrin repeat region circular profile. 391 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00788 Gma-Chr5 13953011 13955586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00788 363 467 Ion Channels AT4G32500 35.238 8.61e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00788 - - gmx:100782444 1053.51