Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00615 ATGGAACTTAGTTTTAAGCACCATTTTGGCCTTGCTTGTGTCTTACTACTTTTAGCTGCTCTGTGTAGCTCACAGGACTCTTTCACTGACTCGAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGCGAATATGGAAGAACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAAGCAAGGTGCAAAATACCACAATATTGTGATGAGAATGGAGCATATGTGGTGGTAACAGACTATGGTGAGGGAGATAGAACAGATTTCATCATGAGCCCACGTGCCTTCTCGAGATTGGGAGGCAATGCAGATGCATCTGCAGAGTTGTTCAAATATGGTGTAGTGGATATTGAATACAGAAGGGTCCCCTGCAGTTACACTGGCTATAATGTTGTGTTTAAGGTCCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTATGTAGATGGAACATACGATGTCACTGCTGTTGAGTTGTTTCAGGAAGATTGCCAAGAATGGAAGCCAATGCGCAGGGCCTTTGGGGCAATGTTTGACTATAGCAGCCCACCAAGGGGTGAAATCTACTTGAGGTTCCAAGTGAGTGGCAGGGCAGGGCTTTATTGGGTGCAGTCCAAGAATGCTATTTCTAGTGATTGGAAGGCCGGAGCAACATATGACACCAATGTTCAGCTTAATTAG 756 0.459 MELSFKHHFGLACVLLLLAALCSSQDSFTDSRATYYGSPDCYGNPRGACGFGEYGRTVNDGSVAGVSRLWRNGSGCGACYQARCKIPQYCDENGAYVVVTDYGEGDRTDFIMSPRAFSRLGGNADASAELFKYGVVDIEYRRVPCSYTGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELFQEDCQEWKPMRRAFGAMFDYSSPPRGEIYLRFQVSGRAGLYWVQSKNAISSDWKAGATYDTNVQLN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00615 251 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Gma05g00615 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Gma05g00615 251 Gene3D - 146 247 IPR036749 -
Gma05g00615 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gma05g00615 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gma05g00615 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Gma05g00615 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Gma05g00615 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Gma05g00615 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 251 - -
Gma05g00615 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Gma05g00615 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Gma05g00615 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Gma05g00615 251 Pfam Expansin C-terminal domain 152 234 IPR007117 -
Gma05g00615 251 Gene3D - 18 145 IPR036908 -
Gma05g00615 251 PANTHER EXPANSIN-B3 4 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00615 Gma-Chr5 6494598 6496738 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00615 14 250 Expansin Gene Family AT4G17030 60.084 5.54e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00615 - - gmx:100783697 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00345 11 2771807 2779819 Gma05g00615 05 6494598 6496738 PCT
Gma05g00615 05 6494598 6496738 Gma11g00345 11 2771807 2779819 PCT