Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00590 ATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTTTAAGTCTCAATTTCCCTCATCACAGTACCCCAAATCCTCAACATCTGAGTCTCATGTCATCCTCTACTCATTCCTCTTCCCCTTCTGGTTTCAACCCTCAAAAACCCTCTTGGAACGAGGCTTTCGCTTCTTCGGATCCAGATCGAAACTCCGACACATGCAGAGGCGAAACACGGTCGTTCCTGCGGGGAATCGACGTGAACCGGTTACCTTCCGCCGTGGACGCCGAGGAGGAAGCGGGAGTTTCGTCTCCAAACAGCACCGTCTCGTGCGTGAGCGGAAAACGAAGCGAGAGAGAACCCAACGGCGAAGAACACGACATGGACAGAGCCTGTTCCCGCGGAATCAGCGACGAAGAAGACGCTGAAACCTCAAGGAAAAAACTTAGACTCTCCAAAGACCAATCCGCTATCCTCGAAGAAAGCTTCAAAGAACACAACACCCTCAACCCCAAGCAAAAATTGGCACTGGCAAAACAGCTAGGGCTTCGACCTAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACTAAGCTGAAGCAAACTGAGGTGGACTGCGAAGTATTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAATAGAAGGTTACAGAAGGAGGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCCCAGTTTTACATGCAAATGAGCCCACCCACGACGCTCACTCTGTGCCCCTCTTGCGAGCGTGTGGCTGTTTCGTCCTCCGCCGTTGGTTCTGCCACGCGTCATCATCCCATGGCCCATGCCCATGCCCATGCTCGGCCCATGCCCAATGGCCCGTGGGCTTCCGCAGCTCCCATTCCACACCGGCCGTTTGATGCTTTCCACCAATGA 897 0.5273 MMVQKEDLGLSLSLNFPHHSTPNPQHLSLMSSSTHSSSPSGFNPQKPSWNEAFASSDPDRNSDTCRGETRSFLRGIDVNRLPSAVDAEEEAGVSSPNSTVSCVSGKRSEREPNGEEHDMDRACSRGISDEEDAETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMSPPTTLTLCPSCERVAVSSSAVGSATRHHPMAHAHAHARPMPNGPWASAAPIPHRPFDAFHQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00590 298 SUPERFAMILY Homeodomain-like 126 194 IPR009057 -
Gma05g00590 298 Pfam Homeodomain 137 191 IPR001356 GO:0003677
Gma05g00590 298 SMART HOX_1 135 197 IPR001356 GO:0003677
Gma05g00590 298 PANTHER - 4 290 - -
Gma05g00590 298 MobiDBLite consensus disorder prediction 86 140 - -
Gma05g00590 298 MobiDBLite consensus disorder prediction 92 106 - -
Gma05g00590 298 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 290 - -
Gma05g00590 298 CDD homeodomain 137 194 IPR001356 GO:0003677
Gma05g00590 298 Pfam Homeobox associated leucine zipper 193 227 IPR003106 GO:0006355|GO:0043565
Gma05g00590 298 MobiDBLite consensus disorder prediction 14 67 - -
Gma05g00590 298 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677
Gma05g00590 298 SMART halz 193 236 IPR003106 GO:0006355|GO:0043565
Gma05g00590 298 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981|GO:0006355
Gma05g00590 298 MobiDBLite consensus disorder prediction 108 140 - -
Gma05g00590 298 PRINTS Lambda-repressor HTH signature 164 173 IPR000047 GO:0003677
Gma05g00590 298 PRINTS Lambda-repressor HTH signature 173 189 IPR000047 GO:0003677
Gma05g00590 298 Pfam HD-ZIP protein N terminus 2 111 IPR006712 GO:0005634
Gma05g00590 298 Gene3D - 141 191 - -
Gma05g00590 298 MobiDBLite consensus disorder prediction 260 288 - -
Gma05g00590 298 Coils Coil 192 229 - -
Gma05g00590 298 MobiDBLite consensus disorder prediction 14 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00590 Gma-Chr5 5985468 5987087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00590 1 296 Homeobox Transcription Factor Family AT4G16780 63.880 1.39e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma05g00590 HD-ZIP_N 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00590 K09338 - gmx:100787231 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01334 17 12059794 12061878 Gma05g00590 05 5985468 5987087 GST
Gma11g00323 11 2612936 2614780 Gma05g00590 05 5985468 5987087 PCT
Gma05g00590 05 5985468 5987087 Gma11g00323 11 2612936 2614780 PCT