Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00579 ATGGGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTACCGCCAGCAACCTTCTATTGTCCGTTTGACAAGGTCTACTCGCCCAGACAAGGCTCGCCGCTTGGGTTTCAAGGCTAAGCAGGGTTATGTGATTTACCGTGTTCGTGTACGAAGGGGTGGCCGGAAGAGACCAGTTCCAAAAGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGCGCTGTTAGAAATGATCCAAGAATCAACTGGCTCTGCAACCCAGTCCATAAACACAGGGAACTGCGTGGCCTCACTTCTGCTGGGAAAAGTAACAGGGGTTTACGGGGCAGAGGACATCTCTACCACAAAAATCGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACTCTTTCCCTTCGTCGCTACCGTTGA 615 0.5057 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHSAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00579 204 MobiDBLite consensus disorder prediction 175 189 - -
Gma05g00579 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gma05g00579 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Gma05g00579 204 MobiDBLite consensus disorder prediction 164 189 - -
Gma05g00579 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Gma05g00579 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gma05g00579 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gma05g00579 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
Gma05g00579 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00579 Gma-Chr5 5765389 5768021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00579 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 90.686 9.38e-127 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00579 K02877 - gmx:100306052 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00579 05 5765389 5768021 Gma05g00579 05 5765389 5768021 ECH
Gma17g01318 17 11860212 11862783 Gma05g00579 05 5765389 5768021 GST
Gma11g00317 11 2553842 2556678 Gma05g00579 05 5765389 5768021 PCT
Gma05g00579 05 5765389 5768021 Gma11g00317 11 2553842 2556678 PCT