Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00565 ATGGATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCTCCAATGGCAGAGCCCTTGGTGGCCACATGAAGGCTCACCTTGCTACTCTCCCTCTCCCTCCAAAGCCTCACTCTTATTCCTCTTCCTCTGACTCAGAACAAGAACAAGAACAAGAATCTCTTAATTATGCTTTAAGGGAGAATCCTAAGAAGAGCTTCAGGGTTGCGGATCCTGAAGACAGAGAGAGCGAAACAGAGTCTAGAAACCCCACTCGCCAACGATCCAAGCGCAACCGGAAATCCACCATGCCGAAGCTCACACCGCCACCCCACCCCGAACCCGAGCCTCTCAGCTCCGTCTCCGACACCTCCCCCGAAGAAGACGTCGCCATGTGCCTCATGATGCTCTCCCGCGACACGTGGCAGCAACACAAACACGCCAATGCAGCTACACCTAAGAGGCGCTGCAGTAGCGGATCAGAGATCAAGAAAAATGTCCGCGGGAACCACCTCTGCCACAAATGTCACAAATCCTTTCGATCTTCTCGCGCGTTCGGAAGCCACAGAAATGTGTGCTGTCCCCGCGAGGAAGGCCAAAATAATTACAACAACAACCGTAGCACTAAGGTTTTCGAATGTCCGTTCTGTTACAAGGTGTTTGGCTCTGGCCAAGCGCTCGGTGGACACAAGAGATCTCACCTAATTCCTTCCTCGTCTTCAACCGTTAACGATTCTGTTAAGTTGAAACATAGCTTCATAGATCTCAACTTGCCGGCTCCGGCGGAAGACGACGACCTTAGCGTTGTTTCTGATGCGTAA 798 0.5125 MDRHKCKLCSRSFSNGRALGGHMKAHLATLPLPPKPHSYSSSSDSEQEQEQESLNYALRENPKKSFRVADPEDRESETESRNPTRQRSKRNRKSTMPKLTPPPHPEPEPLSSVSDTSPEEDVAMCLMMLSRDTWQQHKHANAATPKRRCSSGSEIKKNVRGNHLCHKCHKSFRSSRAFGSHRNVCCPREEGQNNYNNNRSTKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSVKLKHSFIDLNLPAPAEDDDLSVVSDA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00565 265 MobiDBLite consensus disorder prediction 28 118 - -
Gma05g00565 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 226 IPR013087 -
Gma05g00565 265 MobiDBLite consensus disorder prediction 35 58 - -
Gma05g00565 265 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Gma05g00565 265 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Gma05g00565 265 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gma05g00565 265 SUPERFAMILY beta-beta-alpha zinc fingers 201 227 IPR036236 -
Gma05g00565 265 SMART c2h2final6 204 226 IPR013087 -
Gma05g00565 265 SMART c2h2final6 4 26 IPR013087 -
Gma05g00565 265 SMART c2h2final6 163 183 IPR013087 -
Gma05g00565 265 Gene3D Classic Zinc Finger 160 226 - -
Gma05g00565 265 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 265 IPR044303 GO:0006355
Gma05g00565 265 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 265 - -
Gma05g00565 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gma05g00565 265 Pfam C2H2-type zinc finger 203 227 - -
Gma05g00565 265 Pfam C2H2-type zinc finger 3 28 - -
Gma05g00565 265 MobiDBLite consensus disorder prediction 63 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00565 Gma-Chr5 5600638 5601435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00565 1 262 C2H2 Transcription Factor Family AT3G60580 35.762 6.85e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma05g00565 zf-C2H2_6 3.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00565 - - gmx:100806512 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00565 05 5600638 5601435 Gma05g00565 05 5600638 5601435 ECH
Gma17g01311 17 11785559 11786567 Gma05g00565 05 5600638 5601435 ECH
Gma17g01311 17 11785559 11786567 Gma05g00565 05 5600638 5601435 GST
Gma11g00303 11 2448415 2449281 Gma05g00565 05 5600638 5601435 PCT
Gma05g00565 05 5600638 5601435 Gma11g00303 11 2448415 2449281 PCT