Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00562 ATGCTTCTTCAAGTCTTTAGCTGCATATTATTCCATGCAACAACAACAACCGTGACATGCACAACCTACCACCACAGCACCCCCAAAATAGTGTCTTCCAAAAACTCCTCTAACTGGGTGGAGCCCATCGGACACCAAGTAATCACCGTTGACGCTAATGGCAGAGGTCATTTTCGAGAGAAGGTGGTAGTGCCCGTGACGAAGCCGTACATTATGTTTCATGGCGCGGGAAGAGATGTGACAGTGATAGAATGGCATGATAGGGCTAGTGACCCTTGTCCCAACCGCCAACAACTGCATACTTACAGAACTGCTTCTGTTACTGTTTCTCTGCCAGGAATATCCGCATCAAGGTTTAGAAGCAATAATAAATTAATAGGAAATGGTGACACAGCACCGGCGCCAATGCCGGGAATGGAGGGGTGGCAAGCGGTGGCGTTTCGAATATCCGGCTGTGGATTCTACGGTGCACAAGACACTCTTTGCAACGATGCTGGCCGCCATTATTATTTCAAAGAATGTTACATCGAGGGCTCCATAGATTTCATTTTTGGCAATGGCAGGTCCATGTACAAGGTAATTCATTAA 588 0.4694 MLLQVFSCILFHATTTTVTCTTYHHSTPKIVSSKNSSNWVEPIGHQVITVDANGRGHFREKVVVPVTKPYIMFHGAGRDVTVIEWHDRASDPCPNRQQLHTYRTASVTVSLPGISASRFRSNNKLIGNGDTAPAPMPGMEGWQAVAFRISGCGFYGAQDTLCNDAGRHYYFKECYIEGSIDFIFGNGRSMYKVIH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00562 195 PANTHER PECTINESTERASE 68-RELATED 56 192 - -
Gma05g00562 195 ProSitePatterns Pectinesterase signature 2. 176 185 IPR033131 -
Gma05g00562 195 Gene3D - 31 195 IPR012334 -
Gma05g00562 195 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 56 192 - -
Gma05g00562 195 Pfam Pectinesterase 55 191 IPR000070 GO:0030599|GO:0042545
Gma05g00562 195 SUPERFAMILY Pectin lyase-like 47 191 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00562 Gma-Chr5 5570122 5573404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00562 1 192 Carbohydrate Esterase AT5G47500 52.655 2.96e-67 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00562 - - gmx:100796327 268.855