Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00533 ATGGATACATTTTCACATGTACCACCAGGCTTTCGGTTTCATCCAACCGATGAAGAGCTCGTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAACTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTACTTCTTCAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGGATGACAACAACGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCGCAATATTTCTCAGACTTATGCATCATACCACCATCACCAACAACAGCACCACCACCATCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCGCAACTCGAAAGCCCCAAAGTTACTCAATCATCATGCTCAGTTGTCCCTTATGGCTATGAAAGCAACAACAACAACAATGGAAGCACCTTGCAATTCTCATCACTCACTCAGGAAGAACAGCTACAATATTGCAATAATCAACAAAGTCACCATTCTCTCTATGGTAGCAATGATCATGCAGTTGACCAGGTCACAGATTGGCGTGTGCTTGACAAGTTTGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGCACCTATCTTCCATGTGGCTGAACAAATTTCTGTGGCTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA 1095 0.432 MDTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTSQEEGWVVCRVFKKRMTTTQKVGEYDQSPCWYDEQVSFMQDLESPRRNISQTYASYHHHQQQHHHHPCKPELMELQYNNIPHDAFLQLPQLESPKVTQSSCSVVPYGYESNNNNNGSTLQFSSLTQEEQLQYCNNQQSHHSLYGSNDHAVDQVTDWRVLDKFVASQLSHNNQDVSKETSYSNAPIFHVAEQISVAANGSKKEQVSQEYASTSTSSYQIDLWK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00533 364 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Gma05g00533 364 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Gma05g00533 364 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 353 - -
Gma05g00533 364 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Gma05g00533 364 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Gma05g00533 364 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00533 Gma-Chr5 5093059 5096337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00533 1 362 NAC Transcription Factor Family AT1G62700 58.128 1.37e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma05g00533 NAM 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00533 - - gmx:100783529 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00533 05 5093059 5096337 Gma05g00533 05 5093059 5096337 ECH
Gma17g01283 17 11353781 11356902 Gma05g00533 05 5093059 5096337 GST
Gma11g00282 11 2240632 2242381 Gma05g00533 05 5093059 5096337 PCT
Gma05g00533 05 5093059 5096337 Gma11g00282 11 2240632 2242381 PCT