Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00485 ATGGCTGCGACTCTTCAACATTGTAGCTTCTTGTTGATTACATTTACATGGATAATGTTCATAATCATCGGAAAGCCAGCAATAGTAGTGGGCACATTTCAACCTAGTCAATGGACACTATCCCATGCCACATTTTATGGTGATGAGTCTGCTTCTGCCACTATGGGAGGAGCATGTGGGTACGGAAATTTGTTCATAAACGGTTACGGTAAAGACACAGCAGCTTTGAGCTCGACATTGTTCAACAACGGTTATGCATGTGGAACATGTTATCAGATACAGTGTGTTCAATCGAGTGCATGCTATTCCAATGTGCTTTACACTACAGTGACTGCCACGAATCTTGCCCTCCTAATTGGGCTGAGGCCTCTGATGACGGAGGCTGGTGCAACCCACCTCtctCATCTTCACATGTCCAAGCCCGCTTTCATGAAAATTGCTCAGTGGCAAGCTGGAATCATTCCTGTTATGTACCGCAGGAGTGGGGGGCTACGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTGGTGTACGTAATGAATGTGGGAGGTGGAGGAGACATTGCTAACATGTGGGTGAAGGGGAGTGGAACAGAATGGATTAGCATGAGTCACAATTGGGGGGCTTCTTACCAGGCATTTGCAACATTGGGTGGCCAAGTACTTTCCTTTTAA 675 0.4563 MAATLQHCSFLLITFTWIMFIIIGKPAIVVGTFQPSQWTLSHATFYGDESASATMGGACGYGNLFINGYGKDTAALSSTLFNNGYACGTCYQIQCVQSSACYSNVLYTTVTATNLALLIGLRPLMTEAGATHLSHLHMSKPAFMKIAQWQAGIIPVMYRRSGGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGTEWISMSHNWGASYQAFATLGGQVLSF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00485 224 Gene3D - 164 224 IPR036749 -
Gma05g00485 224 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Gma05g00485 224 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Gma05g00485 224 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Gma05g00485 224 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Gma05g00485 224 SMART dpbb_1 73 158 IPR007112 -
Gma05g00485 224 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Gma05g00485 224 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Gma05g00485 224 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Gma05g00485 224 PRINTS Expansin signature 209 224 IPR002963 GO:0009664
Gma05g00485 224 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Gma05g00485 224 Pfam Expansin C-terminal domain 165 224 IPR007117 -
Gma05g00485 224 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 160 IPR007112 -
Gma05g00485 224 PANTHER EXPANSIN 2 224 - -
Gma05g00485 224 Gene3D - 25 161 IPR036908 -
Gma05g00485 224 SUPERFAMILY Barwin-like endoglucanases 37 181 IPR036908 -
Gma05g00485 224 Pfam Lytic transglycolase 73 158 IPR009009 -
Gma05g00485 224 PANTHER EXPANSIN-A15 2 224 IPR002963 GO:0009664
Gma05g00485 224 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 224 IPR007117 -
Gma05g00485 224 SUPERFAMILY PHL pollen allergen 160 224 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00485 Gma-Chr5 4607506 4609356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00485 9 224 Expansin Gene Family AT1G12560 58.482 3.70e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00485 - - gmx:100781459 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00485 05 4607506 4609356 Gma05g00485 05 4607506 4609356 ECH
Gma17g01237 17 10926292 10927924 Gma05g00485 05 4607506 4609356 GST
Gma05g00485 05 4607506 4609356 Gma01g02155 01 56850278 56851866 PCT
Gma05g00485 05 4607506 4609356 Gma11g00250 11 2008085 2009080 PCT