Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00479 ATGCAAGAAGCAGGGTTGGGAATGGGAATGGTGAGCGGAGAAGTGTCCGCCGCCGGCGACCACCATCACCACCACCGTCAAGTGAAGGCGGAGATAGCCACCCATCCACTCTATGAACAGCTTCTGTCTGCACACGTGTCATGCCTCCGCGTGGCCACACCCATCGATCAGTTGCCACTCATCGACGGTCAGTTATCGCAGTCCCACCATCTCCTCCGCTCTTATGCCTCACACCATTCCCATTCCCTCTCGCCCCATGACCGACAAGAACTTGACAACTTCATGGCACAGTATTTGATTGTGTTGTGTACATTTAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTGACAGGAGTCAGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGATTTGCAGATGGATGGCTCTTTAGACCAGTCTAGCGCTGAGGGACATGACTTAATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTGATGGAAAGAGTTCGTCAGGAGCTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCTAGAATTGAAGATGTTAGGGAGGAAATATTAAGAAAACGGAGAGCTGGGAAATTGCCAGGCGACACAACATCGGTTTTAAAGGCCTGGTGGCAGCAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAATCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCAGTTACCTCTCTGAAGTCCAAGCGCAAGAGAGAGTATGCCCACTAA 882 0.4955 MQEAGLGMGMVSGEVSAAGDHHHHHRQVKAEIATHPLYEQLLSAHVSCLRVATPIDQLPLIDGQLSQSHHLLRSYASHHSHSLSPHDRQELDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGTGATMSDDEDDLQMDGSLDQSSAEGHDLMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKREYAH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00479 293 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Gma05g00479 293 SMART HOX_1 214 279 IPR001356 GO:0003677
Gma05g00479 293 Gene3D - 211 286 - -
Gma05g00479 293 Pfam KNOX1 domain 28 69 IPR005540 GO:0003677|GO:0005634
Gma05g00479 293 CDD homeodomain 215 276 IPR001356 GO:0003677
Gma05g00479 293 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Gma05g00479 293 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 4 289 - -
Gma05g00479 293 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Gma05g00479 293 Pfam KNOX2 domain 84 135 IPR005541 GO:0003677|GO:0005634
Gma05g00479 293 SMART KNOX2_2 81 136 IPR005541 GO:0003677|GO:0005634
Gma05g00479 293 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Gma05g00479 293 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 289 - -
Gma05g00479 293 SUPERFAMILY Homeodomain-like 214 279 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00479 Gma-Chr5 4545932 4551950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00479 1 288 Homeobox Transcription Factor Family AT1G62990 76.871 2.12e-165 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma05g00479 KNOX2 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00479 - - gmx:100803130 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00479 05 4545932 4551950 Gma05g00479 05 4545932 4551950 ECH
Gma17g01232 17 10863166 10868714 Gma05g00479 05 4545932 4551950 GST
Gma05g00479 05 4545932 4551950 Gma01g02159 01 56880966 56887718 PCT
Gma05g00479 05 4545932 4551950 Gma11g00246 11 1966141 1972258 PCT