Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00477 ATGGATCAAGACGACGACGAAGCAGGAACAACGAACCTCAGCACCAGCGACGCCGACGTGGCAGAGAAAGAAACCACAAACAACCTCAATGGAGTCCCCAAACAGAACAACGCGTTTGAAGAAACAACAGGTTTTCAAGTCTTGCCGCTGAAAAAGGAGGAGCCAACATATTCGGACCCTGACACGGAGATTGTTCCGGTCAAACTGCCAAAGCGCTCCTCCACGAAGGACCGCCACACCAAAGTGGAAGGGCGCGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCGCGGATCTTCCAGCTCACCCGAGAGCTCGGCCACAAGTCCGACGGCGAGACCGTCCGGTGGCTCCTGGAGCACGCCGAGCCGGCCATCATCGAGGCCACCGGCACCGGCACAGTTCCGGCCATCGCGGTCTCCGTCGGCGGCGCGCTCAAAATCCCAACCACCTCATCCAACTCCAACGAGGAAgccgccgccgccgccgccgccgccgccTCCTCCAACAAGAAGCGGAAACGCCCCTCTAACAGCGAGTTCGTGGACATAAACATAAACATAAACGACGCCGTTTCAAAGTCGTCCGGTCTGGCCCCGGTTCATGTGCCGCAGGGCCTGGTCCCGGTCTGGGCCGTAAGTAACCCCAGCATGGTGATCCCCGCTAACACTTTCTGGATGATCCCTCAGGCCGCGACCACACCTAACCCCTCGGGTGGAGTAGCGGGCCCTGCAAGCCAGCAGCCTCAGTTATGGGCCTTATCTCCCTCCGTGTTCAACGTCGCCGCCAGGCCCATATCGCCTCTGGTTACAACCAATATTCCAGAAGCCCGGCCCGTTATGACGGCCTGCAGTAACGGTTCCAACTCCGCCGTTAGCACGAGCACGGTGGGGGCTAAGCTGGCAACGAAATCCAGCATGGCACCCAGTGTTAGTTCTAGCGGAACCAAGAGTGGCAAGACTCAAATGTTAAGGGATTTTTCGCTTGAAATTTGCGATAAACAAGAGTTACAGCTCTTGGGCCGCTCTGGGACTCACGCGCAGAGTTAG 1050 0.5657 MDQDDDEAGTTNLSTSDADVAEKETTNNLNGVPKQNNAFEETTGFQVLPLKKEEPTYSDPDTEIVPVKLPKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIIEATGTGTVPAIAVSVGGALKIPTTSSNSNEEAAAAAAAAASSNKKRKRPSNSEFVDINININDAVSKSSGLAPVHVPQGLVPVWAVSNPSMVIPANTFWMIPQAATTPNPSGGVAGPASQQPQLWALSPSVFNVAARPISPLVTTNIPEARPVMTACSNGSNSAVSTSTVGAKLATKSSMAPSVSSSGTKSGKTQMLRDFSLEICDKQELQLLGRSGTHAQS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00477 349 MobiDBLite consensus disorder prediction 1 64 - -
Gma05g00477 349 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 347 IPR005333 GO:0003700
Gma05g00477 349 Pfam TCP family transcription factor 74 172 IPR017887 -
Gma05g00477 349 MobiDBLite consensus disorder prediction 8 43 - -
Gma05g00477 349 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Gma05g00477 349 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 8 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00477 Gma-Chr5 4528731 4530259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00477 71 346 TCP Transcription Factor Family AT2G45680 47.419 2.88e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma05g00477 TCP 3.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00477 - - gmx:100797827 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00477 05 4528731 4530259 Gma05g00477 05 4528731 4530259 ECH
Gma17g01230 17 10840375 10841546 Gma05g00477 05 4528731 4530259 GST