Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00471 ATGAATATTCTCGGACAATCATTCAACGAATCAAACAACGGAAGCTACTCTTGTTCGTCGCCGGAGACTGGTAGCTCCTCTAACATTCCAAACACTTTTCACTCCGACGAGGAAGTGCACACACTAGCTTCGGCGCGTCCTAAGAAACGTGCGGGGCGTCGAATTTTTAAGGAGACAAGACACCCGGTGTACCGAGGAGTACGAAGGAGGAACAACAACAAGTGGGTCTGCGAGGTTCGTGTTCCCAACGACAAGTCCACCAGGATTTGGCTTGGAACGTATCCAGTGCCTGAGATGGCCGCACGTGCGCACGACGTCGCCGCGCTCGCGCTTCGGGGCAAGTCGGCTTGCCTCAACTTCGCCGACTCGGCGTGGCGGCTGCCCTTGCCGGCGTCGACAAATGCGAAGGAGATACGGCGAGTGGCGGCGGCGGCTGCTGTAGCGATTGCGGCGGAAGACAGCTGCGGCGAGCAGTTACAGAATAGTATTGTGAATGATGCCGTTGCTGATGATTGTGAAGTTAGCAGAAGTGACGTCAGCTTTGATGAAGATTCCAATAGCAACAAAGGTTTGAGAGTTTTTTGTGATTTGGATGAAATTACAATGGCAGATGCACCGGTTTTTGAGGACATGCGTGAGTGGCTTCAGAGTATGGCGGATGAGCCTTTAAGATCGCCTACTTTTGTAACATATGTTAATGTTAGGGATGTCTGGAACTTTGTGGAGGATGATGCTGAGGTATCCTTGTGGAGCTTCACAATTTAG 765 0.515 MNILGQSFNESNNGSYSCSSPETGSSSNIPNTFHSDEEVHTLASARPKKRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPVPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAAAAAVAIAAEDSCGEQLQNSIVNDAVADDCEVSRSDVSFDEDSNSNKGLRVFCDLDEITMADAPVFEDMREWLQSMADEPLRSPTFVTYVNVRDVWNFVEDDAEVSLWSFTI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00471 254 CDD AP2 64 123 IPR001471 GO:0003700|GO:0006355
Gma05g00471 254 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
Gma05g00471 254 SUPERFAMILY DNA-binding domain 63 123 IPR016177 GO:0003677
Gma05g00471 254 Pfam AP2 domain 62 113 IPR001471 GO:0003700|GO:0006355
Gma05g00471 254 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 254 IPR045277 GO:0003700
Gma05g00471 254 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Gma05g00471 254 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gma05g00471 254 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Gma05g00471 254 MobiDBLite consensus disorder prediction 1 33 - -
Gma05g00471 254 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Gma05g00471 254 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00471 Gma-Chr5 4485757 4486746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00471 42 252 AP2-EREBP Transcription Factor Family AT1G12610 46.667 6.56e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma05g00471 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00471 - - gmx:100795696 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00471 05 4485757 4486746 Gma05g00471 05 4485757 4486746 ECH
Gma17g01225 17 10792203 10793258 Gma05g00471 05 4485757 4486746 GST
Gma05g00471 05 4485757 4486746 Gma01g02169 01 56977743 56980338 PCT