Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00437 ATGACGGTGGTGGAAGAAAGAGAGGCAGTGTTGGCATGTAGTGACAAGAACATGAAGATAGGGGCGACGATGTGGGACTTGGAAACAGGAGAAAAATTGTTTCACATACCAACATGTGCCTCGCCACCTTTTGGCTTCTTGTGCTTGAGAAACCGTTTCCTTGTGGCGTCTCAATCAAACAAACTCGGGTCTGTTGGCGACGGAGCCATTGCAATTTGGTCTTTCAACAAGCCTCAACAACCACTTTTGAATTACACGGTGGAGGCTATTGGGCCACTTTCTTGTACAAATGATGGCATATACCTCGTGGGAGGAGCTTTGTCCGGAAAGGCATATCTTTGGGATGTGACCAATGGAAAATTACTGAAGACTTGGAAGGCTCATAATAAATCTTTAAATTGCATGCTATTTTCAGATGACAATTCTCTTCTTTTTTCTAGTTCATCTGATGGAATGATATGTGTTTGGCCCATGATTAGTCTATTAGATGTAGAAGATACAAGAAGCTCGCCACCTCCATTGCATTGTTTTTTAGGGCACATGTCTTCCATAACTGGGCTTTTAACTACACCAAATAGTTACTTATCAAGATTAGTATCAAGCTCCCTTGATGGCACATGCAAGGTTTGGGATTTTATCTCTGGAATGCTTGTGCAAACTCACGTTTATCCTTTTGCAATAACTTCCATCACCCTTCACCAAAGGGAAATGCTCTTATTTTGCGGAACAGAAAAGGGAACAATAATTGTTAACAAGCTTGATGTTGGTCAGGAAGAAGGTTTTTCCATTGTCAATGAAAGCCAACAACCACTTGAATTGAAAGGACACAATGGAGCCATTACTGCCTTAACCTCTACTCGAGCATGCTTAATATCTGCCTCAGAAGATTGTTCTATCTGTGCTTGGGATATCTTTAGTTGGAAAAGGATTCAAAGGTTCAGTATTCAAAAAGAAAGGAGATCTGCCTATGGCCATGACAATGCAAATGAAAATGGAAGCAAATGTAGAGAGTCGAGTATTGGCGACAAACATGGCAAAGCATGTTATGGTGATAAACAAACAATTGCAGTCAAAATTATTGGCAACAAGTTCTTCTTAAGGTTCTCTAGCCACAAATGCCTCCCGAAGCCCCTCGTCCACTGCTACTTCGCACAACTCGTCTCCATGCTCTGCTTCTGCCATTGCCACGACGTCGCCCATTGCAACCTCAAGCCACAAAACCTCCTCCTGGATGGTGCCGATGACCTGAAGGTCTTCGACTTTGGCCTCTCTGCCTTCCATGAACACCTCCATGACAGACTCCTCCACACTATTTACAACACCCTAACCTTCACCGCGCCAAAGATCCTCTATTGTGTCGGCTACGATGGCTCAAAGGTCAAGCTTGATCCTGCGATATCATCCTTTACAAACCTCTTTGCCGACCACTTTAATCAAATACTCTCTAAAACTAGTTTTCTCCCTACAATGACGCCAACATTGACAGACCAACCAATACTCAACAAATCATAA 1512 0.4299 MTVVEEREAVLACSDKNMKIGATMWDLETGEKLFHIPTCASPPFGFLCLRNRFLVASQSNKLGSVGDGAIAIWSFNKPQQPLLNYTVEAIGPLSCTNDGIYLVGGALSGKAYLWDVTNGKLLKTWKAHNKSLNCMLFSDDNSLLFSSSSDGMICVWPMISLLDVEDTRSSPPPLHCFLGHMSSITGLLTTPNSYLSRLVSSSLDGTCKVWDFISGMLVQTHVYPFAITSITLHQREMLLFCGTEKGTIIVNKLDVGQEEGFSIVNESQQPLELKGHNGAITALTSTRACLISASEDCSICAWDIFSWKRIQRFSIQKERRSAYGHDNANENGSKCRESSIGDKHGKACYGDKQTIAVKIIGNKFFLRFSSHKCLPKPLVHCYFAQLVSMLCFCHCHDVAHCNLKPQNLLLDGADDLKVFDFGLSAFHEHLHDRLLHTIYNTLTFTAPKILYCVGYDGSKVKLDPAISSFTNLFADHFNQILSKTSFLPTMTPTLTDQPILNKS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00437 503 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 6 317 - -
Gma05g00437 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 156 - -
Gma05g00437 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 211 - -
Gma05g00437 503 SMART WD40_4 78 115 IPR001680 GO:0005515
Gma05g00437 503 SMART WD40_4 118 157 IPR001680 GO:0005515
Gma05g00437 503 SMART WD40_4 266 303 IPR001680 GO:0005515
Gma05g00437 503 SMART WD40_4 170 211 IPR001680 GO:0005515
Gma05g00437 503 SMART WD40_4 214 252 IPR001680 GO:0005515
Gma05g00437 503 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Gma05g00437 503 Gene3D - 2 222 IPR015943 GO:0005515
Gma05g00437 503 PANTHER WD-REPEAT PROTEIN 18 6 317 IPR045227 -
Gma05g00437 503 Pfam WD domain, G-beta repeat 173 211 IPR001680 GO:0005515
Gma05g00437 503 Pfam WD domain, G-beta repeat 119 156 IPR001680 GO:0005515
Gma05g00437 503 Pfam WD domain, G-beta repeat 272 303 IPR001680 GO:0005515
Gma05g00437 503 SUPERFAMILY WD40 repeat-like 23 316 IPR036322 GO:0005515
Gma05g00437 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 312 IPR001680 GO:0005515
Gma05g00437 503 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Gma05g00437 503 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Gma05g00437 503 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Gma05g00437 503 ProSiteProfiles Protein kinase domain profile. 250 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00437 503 Gene3D Transferase(Phosphotransferase) domain 1 354 462 - -
Gma05g00437 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 220 IPR001680 GO:0005515
Gma05g00437 503 SMART serkin_6 250 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00437 503 SUPERFAMILY Protein kinase-like (PK-like) 363 457 IPR011009 -
Gma05g00437 503 Gene3D - 223 328 IPR015943 GO:0005515
Gma05g00437 503 Pfam Protein kinase domain 364 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00437 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 156 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00437 Gma-Chr5 4168011 4176952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00437 361 459 Miscellaneous Gene Families AT3G23000 48.485 4.15e-22 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gma05g00437 Pkinase 2.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00437 K14829 - gmx:102662801 639.417