Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00427 ATGGCCCCTCCTCCTTATAGTGCCTACAACGGAGAAATCGATGGGGAAAATCTACCTCTAGCTTTTGATATCTGGGAAAATCTATGGGCCTATGGCTATTACCCTCATCAACCTATTTCGGAGATCAATAGCACTTCTACATTGGTTGATTTCCCCTTTTGCGATGGCACCATCGTCAGGGATAACAAAAGGGTAAAGAGAACCGTGTGCTTCCCTATTTATAACAGCATTAATTGCCATAGTTTCTTCAACACCAACAACAGCAGTAGTAGGAATAGCATACCAAAGCTCCACTTCAGAGATCACATACGGACTTACACTCAAAGATATCTCGCAGCTGAACCCGTAGAAGATACAAACAGTTCAGAAAGTAGTGGAGGCGAAGAAGATGGGTGTGCAGATGGAGTGAGGCTTGTTCAGCTTCTAATAGCATGTGCGGAAGCGGTGGCTTGTCGTGACAAATCACACGCTTCCATATTACTATCCGAACTTAAAGCGAATGCTTTAGTGTTCGGATCCTCATTCCAAAGAGTTGCTTCCTGTTTCGTCCAAGGCCTGATCGAGAGGCTCAATCTGATTCAGCCCATCGGGCCTGCTGGCCCCATGATGCCCTCCATGATGAACATCATGGACGTGGCCTCAGACGAAATGGAGGAAGCATTCAGGTTGGTTTATGAACTGTGTCCGCACATCCAGTTCGGACACTATTTGGCTAATTCCACAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTCCATGTCGTGGACCTAGGCATGAGCCTGGGTCTACGACACGGACACCAATGGAGAGGTCTGATCCAGAATCTTGCCGGTCGTGTAGGCGGCGAACGTGTTCGTCGCCTGCGGATCACGGGGGTGGGGCTCTGTGAGAGGCTTCAAACCATTGGAGAAGAACTCTCCGTTTATGCAAACAATTTGGGCGTCAACTTGGAGTTCTCCGTGGTGGAGAAGAATTTGGAAAATCTGAAACCAGAGGACATTAAAGTGAGGGAAGAAGAGGTTCTTGTGGTGAACAGCATTCTGCAGCTGCATTGCGTGGTGAAGGAAAGCCGCGGGGCTTTGAATTCGGTGCTGCAGATGATTCACGGGCTTGGACCCAAAGTGTTGGTGATGGTGGAGCAGGACTCGAGTCATAATGGACCCTTTTTTCTAGGGAGGTTTATGGAATCATTGCACTATTACTCTTCAATTTTTGACTCGTTGGATGTTATGCTGCCAAAGTATGACACTAAGAGGGCGAAGATGGAGCAGTTTTACTTTGCTGAGGAAATAAAGAACATTGTGAGTTGTGAGGGGCCTTTGAGGATGGAGAGACACGAGAGAGTGGACCAGTGGAGGAGGAGAATGAGCAGGGCTGGGTTTCAGGCTGCGCCTATTAAGATGGTGGCTCAGGCGAAGCAGTGGCTTCTCAAGAACAAGGTTTGTGAGGGGTATACTGTTGTGGAAGAGAAGGGGTGTTTGGTTCTTGGATGGAAATCGAGGCCTATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1536 0.4798 MAPPPYSAYNGEIDGENLPLAFDIWENLWAYGYYPHQPISEINSTSTLVDFPFCDGTIVRDNKRVKRTVCFPIYNSINCHSFFNTNNSSSRNSIPKLHFRDHIRTYTQRYLAAEPVEDTNSSESSGGEEDGCADGVRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLIERLNLIQPIGPAGPMMPSMMNIMDVASDEMEEAFRLVYELCPHIQFGHYLANSTILEAFEGESFVHVVDLGMSLGLRHGHQWRGLIQNLAGRVGGERVRRLRITGVGLCERLQTIGEELSVYANNLGVNLEFSVVEKNLENLKPEDIKVREEEVLVVNSILQLHCVVKESRGALNSVLQMIHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSSIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKMVAQAKQWLLKNKVCEGYTVVEEKGCLVLGWKSRPIVAVSCWKC 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00427 511 Pfam GRAS domain family 138 510 IPR005202 -
Gma05g00427 511 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 83 510 IPR005202 -
Gma05g00427 511 ProSiteProfiles GRAS family profile. 129 510 IPR005202 -
Gma05g00427 511 PANTHER DELLA PROTEIN RGL1-LIKE 83 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00427 Gma-Chr5 4039196 4040731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00427 130 511 GRAS Transcription Factor Family AT1G66350 38.660 9.84e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma05g00427 GRAS 4.3e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00427 - - gmx:100815959 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00427 05 4039196 4040731 Gma17g01185 17 10378224 10379768 ECH
Gma05g00427 05 4039196 4040731 Gma05g00427 05 4039196 4040731 ECH
Gma17g01185 17 10378224 10379768 Gma05g00427 05 4039196 4040731 GST