Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00421 ATGGAAGGCTCTGAATCCGATTCTGTGTCACTTTCCATTTCCAATGGCGAAGAGCCCCAATTGGGGCGACCTTCTTCCCCCGCCGCTCCTCCTGAGCCGTCAGATCTCAATCATGCGGCGGAGGAAGAGACACTCTCCGGGGAGCTTCAGAGCAAGTTGGATTTGAAGGATGTGGATGAAAGTGAGGAGAAAGTTTCGGACTTTAACGATGGTGGAGGAGTTTGTGATGAAGAAACTGGTAAGGGTGATGGAGATAGTAAGGGTTGGGAGACCAATAGTTGGAATGAGGAAGTGGGtgttgatgttgatgttgatggtgatggtgatggtgatggtgatgatgatgttgatggtgatgttgatggtgatgATGAAGTGGAGAAGAAGGAAGGGAGAAACAGTGGTGGAACTCACCACTACCCTTTGAGGCCTGAAGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAATTGCAAGTTCAATCACCCCATTAAGAGGAAAAGTCAGGCTGTTAAAGAGAAGGCAGGAGAAAGAGAAGAAACCACAGAAAGATCAGGCATGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAATTTGGTAAATCTTGTAAATATAACCACACAAGAGGAAAAATTTCAACAGCACCAGCACCACTTTTGGAACTTAACTTTCTTGGCCTGCCTATTCGTCCGGGGGAAAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGCAAGTTTGGAGCAAACTGCAAGTTCAACCATCCTGATCCTACAGCTGTTGGAGGAGGAGGAGGTAATCCTCCTTCAGGGTATGGTAATGGAGGGTCTATTTCATTACAAGGTGTATCACAAACATCTGTACCCTCCTGGTCTTCTCCAAGAACATTAAATGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGATTGGAATGGATATCAGGCATCTGTCTACTTACCTGAGAGGAGCATTCATCCACCTTCTACATTTGTCATGAACAACCCAGCAATTGATACAAATGTTTACATGCACCATCAAAAGCAGATGCCTGTTGATGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTTCTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCCAAGAATCGGGTTACAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCTGACCAAAGTGTCTGCTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCCGTGATGATTCCTGGACTTGAGCAACAATCCTACTCAAACTCAGCTAGTGCTGGGGTGGCTGGGATAGGTGGAAGTACAGGCGTAACTGATGCGACAATTCAGCAATCTGTGTAA 1473 0.4297 MEGSESDSVSLSISNGEEPQLGRPSSPAAPPEPSDLNHAAEEETLSGELQSKLDLKDVDESEEKVSDFNDGGGVCDEETGKGDGDSKGWETNSWNEEVGVDVDVDGDGDGDGDDDVDGDVDGDDEVEKKEGRNSGGTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIKRKSQAVKEKAGEREETTERSGMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRPGERECPYYMRTGSCKFGANCKFNHPDPTAVGGGGGNPPSGYGNGGSISLQGVSQTSVPSWSSPRTLNEASPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERSIHPPSTFVMNNPAIDTNVYMHHQKQMPVDEFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRVTRLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPVMIPGLEQQSYSNSASAGVAGIGGSTGVTDATIQQSV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00421 490 ProSiteProfiles Zinc finger C3H1-type profile. 238 266 IPR000571 GO:0046872
Gma05g00421 490 MobiDBLite consensus disorder prediction 280 303 - -
Gma05g00421 490 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 5 490 - -
Gma05g00421 490 SUPERFAMILY CCCH zinc finger 241 265 IPR036855 GO:0046872
Gma05g00421 490 SMART c3hfinal6 190 217 IPR000571 GO:0046872
Gma05g00421 490 SMART c3hfinal6 422 449 IPR000571 GO:0046872
Gma05g00421 490 SMART c3hfinal6 376 403 IPR000571 GO:0046872
Gma05g00421 490 SMART c3hfinal6 238 265 IPR000571 GO:0046872
Gma05g00421 490 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Gma05g00421 490 SUPERFAMILY CCCH zinc finger 193 220 IPR036855 GO:0046872
Gma05g00421 490 ProSiteProfiles Zinc finger C3H1-type profile. 422 450 IPR000571 GO:0046872
Gma05g00421 490 ProSiteProfiles Zinc finger C3H1-type profile. 376 404 IPR000571 GO:0046872
Gma05g00421 490 SUPERFAMILY CCCH zinc finger 381 405 IPR036855 GO:0046872
Gma05g00421 490 MobiDBLite consensus disorder prediction 270 303 - -
Gma05g00421 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 424 448 IPR000571 GO:0046872
Gma05g00421 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 169 IPR000571 GO:0046872
Gma05g00421 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 215 IPR000571 GO:0046872
Gma05g00421 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 240 264 IPR000571 GO:0046872
Gma05g00421 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 378 403 IPR000571 GO:0046872
Gma05g00421 490 MobiDBLite consensus disorder prediction 1 141 - -
Gma05g00421 490 MobiDBLite consensus disorder prediction 100 124 - -
Gma05g00421 490 SUPERFAMILY CCCH zinc finger 420 448 IPR036855 GO:0046872
Gma05g00421 490 PANTHER PROTEIN PHOSPHATASE RELATED 5 490 - -
Gma05g00421 490 Gene3D - 357 416 - -
Gma05g00421 490 Gene3D - 186 270 - -
Gma05g00421 490 Gene3D - 421 469 - -
Gma05g00421 490 MobiDBLite consensus disorder prediction 36 85 - -
Gma05g00421 490 MobiDBLite consensus disorder prediction 1 21 - -
Gma05g00421 490 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872
Gma05g00421 490 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Gma05g00421 490 Gene3D - 120 182 - -
Gma05g00421 490 SUPERFAMILY CCCH zinc finger 142 171 IPR036855 GO:0046872
Gma05g00421 490 MobiDBLite consensus disorder prediction 125 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00421 Gma-Chr5 3981288 3985958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00421 137 480 C2H2 Transcription Factor Family AT3G02830 39.782 3.61e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma05g00421 zf-CCCH 7.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00421 - - gmx:100786894 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00421 05 3981288 3985958 Gma17g01178 17 10318687 10322904 ECH
Gma05g00421 05 3981288 3985958 Gma05g00421 05 3981288 3985958 ECH
Gma17g01178 17 10318687 10322904 Gma05g00421 05 3981288 3985958 GST
Gma05g00421 05 3981288 3985958 Gma04g01861 04 48767685 48772935 PCT
Gma05g00421 05 3981288 3985958 Gma06g01548 06 15012055 15018382 PCT
Gma04g01861 04 48767685 48772935 Gma05g00421 05 3981288 3985958 PCT
Gma06g01548 06 15012055 15018382 Gma05g00421 05 3981288 3985958 PCT