Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00419 ATGGATGGTAGGAGGCATTCTGTTGATATTCCTATTTCCAAAACTCTTGTGGCACTGAAGAGAGTAAGATCATTGAGGGATCCATCTACTAATGGTGTTAGCAGACTCTCTCCTTTGGTTGATGATGGAGATTGGGAAGATGGTTCTAGTAATGGGGTTTCTCTGAGTTTGAGGTTCCTGAATGGTTCTCATGTATGTGATTCTAATGGTAATGGTCTTTTAAGATCAAGTAGTTTAGATTTTAAGGGACAAAAAGAGCAGGACACTGCTGAGTTTGAATTAGAAATGTGGAACTCTAAGATGAACTATTGTGGGATCTCATGTCAGGAAGGGCTACAAGATGATGGACTAGTTTACTCTAATCCTAAGCAACAAGGTATTTCTGGAGATAAATCACCGAATGAAAGCTGTTGTAGCAACCATGAAGGTAGAGGATTGGATTTGGTTTCCATCATGCCTTCATCTAATCATTTGAAGGATGGAGAGTCATGCTATTTGTCAATTGCAACAAGAGTAGAACACTCAAAGTCAGCAAGAAAATCCCTATGCAAGAATCAAGTGAAACCATCGGAAGTGATTGGTGATATTGCAAGCCATGTAGGAAGTCAACAATGCCTTTCTGTTTTTGATGCTTGCTCAGCTCGTAGTGCCTCGGAACATATTGCTCAAGAGGTTGATGTTTTAGATAGTCACCATGGATGTGGATTAAGGAGTTGTTTGTCAAAGTCACCAAGGTTTAGAGAATCAAATCGATATTCTGAAATAGAAAGCCTTCCGTTGATATTGCAGCATGTAAATGAGACGGATCTCAATGGACATAGAAGCATGAGACACATTGGTGTTGAAATTAGTCCAACTTCAGAAACTCCTAGAAGTTTATCTATGAAATTCAGGCCAAAATCTTTCAGTGATTTGGTTGGGCAAAATGTGATAGGAAAGTCTCTTTTGGGTGCTATCTCTACAGGAAGGATATCATCATTTTATATCTTCCATGGACCACGCGGCACAGGCAAGACCTCTGCGTCTAGGATATTTGCCGCTGCAATGAATTGCCTCTCCCCTCTGGAGCAAAAGCCGTGTGGTCTGTGTAGAGAATGTGTTTTGTTCTTTTTGGGAAGAAGTAAAAATGTCAAGGAAGTTGATTCTTTGAGAATCAACCGTGCAGACAAGGTTAAGTCCCTTGTTAAGAGTGCATGCATTCCTCCAGCTTCCTCAAGTTTTAAGGTGTTCATTGTTGATGAGTGCCAGGTGTTGCATGGAGAAACATGGGCGTGTCTTTTGAATTGCCTAGAGAATGTTTCTCCACGTGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGGAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGCTGACATAGCAAGAAGATTGAAAAAGATTTGTGTTGAAGAAGGTCTTGAATCTGAACAAGTTGCTTTGGACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCTGAAACTATGCTGGATCAACTGAGTCTGCTTGGTAAAAAAATTACTATTAGCTTAGTCCACGAGCTTACTGGGGTCATTTCTGATGACGAATTGCTGGATTTGCTGGATTTGGCTTTATCATCTGACACTTCAAATACAGTTATAAGAGCCCGCAAACTTGTCAGAACAAGGATAGATCCTTTGCAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATGTGAACTTGGTGCTTCTGAAACCAGAACAAGATTTTGTAATAGATATACCTCGGAAGCAGACATGCAGAAACTAAGTCATGCATTAAGAATACTGTCTGAAACAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCTGCTCTTCTACAGTTGAGCTCCGTAGAATATTCATCTGTGGATACAAATGATGCAAAGTTGTGTGCACGAGCTGTGTCCAATGGAGATGGTGATATCTGCAGCACACCTCCTAAAGGGGACAGCTTGGAGCATCTTGCTACAACAGGTCAATGTGATGACAAGCCATATACATTAGGATTAGGAGTACAGGAGGATCACAAAGGAACATTGGATTCTATATGGTATAAAGCCACTGAGATGTGTCAATCTAGCAGGCTCAAAACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCAGTTTGTATTAGTCAAGGCCGTGCAGTTGCTGAGTTAGAGTTCCACCACCGTGACTATGTAAGTAGGGCTGAGAAGTCATGGAAGCTGATTGCAAGTTCTCTGCAGTTCATATTGGGTTGTAACCTTGAGCTCAGAATCAACTATGTACCTTCCTGTACTTCAGATTCTATATATGCTAAATTGAAGAGGACATCTTTCAATTTCTTCGGTTGTTCTCGTAGAATTCGTTGGAAATCTTTGCCATCTAATGAACAAGGAAGTGAATCAGACTATGCTGATTACACTTCTCAAAAGCCCATGATGAAGGATCAAACTCAAACTTGTTCCTCTGATTGTGAACCTCCGGTGCCACCATTTGAGTCCTATAATGGAATGCAGGTCATGACAACTTTGAGAAGTAGTGAAGGAAATTTGCTAAGCTCAGGGAAAATGTTATTGAATAGGCAAGATCAAGAGACTCCAAGAATTTCTTGTTCTAGAGTTGATTCTCTCAAGGAAGAGGGATGCAATTATGAGCATCTAGCTCCATCAACCCTTGATTTAGATAATCAGACTGACTGTTTTCCCCGAACCCGCTGGCTTCATAAAAAGTTCTCTTCTTCATATGCATCACAACAGAAGAATTTTGTTTTATCTATCCCCAAGTTCAAATGTTCTGAGACTTATAGATATGATCTGGAACCCTGTATCTTTTCCCACAGCTCTAACAACTGCACCAAAGCCATTGAGGAAAAGTAG 2931 0.4067 MDGRRHSVDIPISKTLVALKRVRSLRDPSTNGVSRLSPLVDDGDWEDGSSNGVSLSLRFLNGSHVCDSNGNGLLRSSSLDFKGQKEQDTAEFELEMWNSKMNYCGISCQEGLQDDGLVYSNPKQQGISGDKSPNESCCSNHEGRGLDLVSIMPSSNHLKDGESCYLSIATRVEHSKSARKSLCKNQVKPSEVIGDIASHVGSQQCLSVFDACSARSASEHIAQEVDVLDSHHGCGLRSCLSKSPRFRESNRYSEIESLPLILQHVNETDLNGHRSMRHIGVEISPTSETPRSLSMKFRPKSFSDLVGQNVIGKSLLGAISTGRISSFYIFHGPRGTGKTSASRIFAAAMNCLSPLEQKPCGLCRECVLFFLGRSKNVKEVDSLRINRADKVKSLVKSACIPPASSSFKVFIVDECQVLHGETWACLLNCLENVSPRVVFVMITPDLDKLPRSAVSRAQRYHFAKIKDADIARRLKKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITISLVHELTGVISDDELLDLLDLALSSDTSNTVIRARKLVRTRIDPLQLISQLANLIMDILAGKCELGASETRTRFCNRYTSEADMQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSVEYSSVDTNDAKLCARAVSNGDGDICSTPPKGDSLEHLATTGQCDDKPYTLGLGVQEDHKGTLDSIWYKATEMCQSSRLKTFLRKQGKLSSVCISQGRAVAELEFHHRDYVSRAEKSWKLIASSLQFILGCNLELRINYVPSCTSDSIYAKLKRTSFNFFGCSRRIRWKSLPSNEQGSESDYADYTSQKPMMKDQTQTCSSDCEPPVPPFESYNGMQVMTTLRSSEGNLLSSGKMLLNRQDQETPRISCSRVDSLKEEGCNYEHLAPSTLDLDNQTDCFPRTRWLHKKFSSSYASQQKNFVLSIPKFKCSETYRYDLEPCIFSHSSNNCTKAIEEK 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00419 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 515 IPR027417 -
Gma05g00419 976 Gene3D - 466 528 - -
Gma05g00419 976 Gene3D - 529 642 - -
Gma05g00419 976 CDD HLD_clamp_pol_III_gamma_tau 465 528 IPR045085 -
Gma05g00419 976 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 107 952 - -
Gma05g00419 976 SUPERFAMILY post-AAA+ oligomerization domain-like 535 636 IPR008921 GO:0003677|GO:0006260
Gma05g00419 976 Gene3D - 284 463 IPR027417 -
Gma05g00419 976 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 292 638 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gma05g00419 976 Pfam DNA polymerase III, delta subunit 308 465 - -
Gma05g00419 976 CDD AAA 306 456 - -
Gma05g00419 976 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 107 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00419 Gma-Chr5 3963514 3967896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00419 283 621 Core DNA Replication Machinery Family AT1G21690 25.294 1.52e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00419 - - pvu:PHAVU_003G207500g 1597.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00419 05 3963514 3967896 Gma05g00419 05 3963514 3967896 ECH
Gma17g01176 17 10297575 10301911 Gma05g00419 05 3963514 3967896 GST
Gma05g00419 05 3963514 3967896 Gma04g01854 04 48665179 48669460 PCT
Gma05g00419 05 3963514 3967896 Gma06g01555 06 15102837 15108021 PCT
Gma04g01854 04 48665179 48669460 Gma05g00419 05 3963514 3967896 PCT
Gma06g01555 06 15102837 15108021 Gma05g00419 05 3963514 3967896 PCT