Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00411 ATGTCTATGATGTCTCTCACAACCGTGGCTGCATTCAAGTCCCTCACAATGGCGGAATCGTGCCTTCTATCCCTCCCTTCCCTCTTCTACGCCAAAAACAATACCCTTTCTCTCTCAATTCCCACCAAGCCCCTCAACCTCCATCTTCCATGCTCCAACTCTTCGCTCTTTCCCCTCACCACCAAAACAACGCGCCACTCTTCTCTCCTCACATTCGTGGCTCAGACATCGGATTGGGCCAAAGAAGAAGAGGAAGAAGAAACCTCGTGGGAGAACCAAGGCGACACCGCGTGGGGAACTGAAGAAGGTGGCCACGAAGAAGGGGGTTTCGCTGAAAAAGCTGAGGAAGATAAGATCTTCGTTGGGAACTTGCCTTTCGACATCGACAGCGAGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACCATGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCACGCCCACCACGTTCCTTTAGTTCTGGTTTAAGAGTCTATGTTGGCAACTTGCCATGGGAAGTTGACGATGCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTCTAGTGAGACTGATATGAATGATGCAATTGCTGCCCTTGATGGTCAGAGTTTGGACGGGAGGGCTATCAGAGTGAATGTTGCACAGGATAGGCCTAGCCGCAGCTCTTTTTGA 900 0.5011 MSMMSLTTVAAFKSLTMAESCLLSLPSLFYAKNNTLSLSIPTKPLNLHLPCSNSSLFPLTTKTTRHSSLLTFVAQTSDWAKEEEEEETSWENQGDTAWGTEEGGHEEGGFAEKAEEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEMFSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAQDRPSRSSF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00411 299 PANTHER OS02G0815200 PROTEIN 4 93 - -
Gma05g00411 299 PANTHER OS02G0815200 PROTEIN 98 299 - -
Gma05g00411 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Gma05g00411 299 SUPERFAMILY RNA-binding domain, RBD 116 212 IPR035979 GO:0003676
Gma05g00411 299 SUPERFAMILY RNA-binding domain, RBD 206 297 IPR035979 GO:0003676
Gma05g00411 299 CDD RRM_HP0827_like 118 195 - -
Gma05g00411 299 CDD RRM_HP0827_like 215 291 - -
Gma05g00411 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Gma05g00411 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 188 IPR000504 GO:0003723
Gma05g00411 299 MobiDBLite consensus disorder prediction 81 109 - -
Gma05g00411 299 PANTHER RIBONUCLEOPROTEIN 98 299 - -
Gma05g00411 299 PANTHER RIBONUCLEOPROTEIN 4 93 - -
Gma05g00411 299 SMART rrm1_1 215 288 IPR000504 GO:0003723
Gma05g00411 299 SMART rrm1_1 118 191 IPR000504 GO:0003723
Gma05g00411 299 Gene3D - 200 298 IPR012677 -
Gma05g00411 299 Gene3D - 73 199 IPR012677 -
Gma05g00411 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00411 Gma-Chr5 3874521 3877228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00411 106 296 Eukaryotic Initiation Factors Gene Family AT3G16380 34.000 8.33e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00411 - - gmx:100811487 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00411 05 3874521 3877228 Gma17g01169 17 10217076 10219178 ECH
Gma05g00411 05 3874521 3877228 Gma05g00411 05 3874521 3877228 ECH
Gma17g01169 17 10217076 10219178 Gma05g00411 05 3874521 3877228 GST
Gma05g00411 05 3874521 3877228 Gma04g01845 04 48543601 48546196 PCT
Gma05g00411 05 3874521 3877228 Gma06g01564 06 15203276 15206025 PCT
Gma04g01845 04 48543601 48546196 Gma05g00411 05 3874521 3877228 PCT
Gma06g01564 06 15203276 15206025 Gma05g00411 05 3874521 3877228 PCT