Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00409 atggagatggaacgcgtcttcgaatttcctcacacttacatggatcgtcgcccgagaaagagagcgagattgggctgggacatccctgaagttcccaagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAACATACCACTAGTTCTCTATTTGTTAAGCCAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGGCATTACATGTTTACGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCATACCAAAATGGGTGAAGGAACTTTTGGGCAGGTCTTAGAATGCTGGGATAGAGAAAGGAAGGAAATGGTTGCCGTAAAAATTGTCCGTGGTATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAACTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCATGTGATATATGGAGTGTGGGATGTATATTGGTTGAATTATGCACAGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTTGCAATGATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGTGCAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGATTTTACGGGCATGATTCATATGGCATCCTGAGCTTTGTGTGCACGAGTATAAGTCTCCATTCGAGTGTACCGCACACACATGATATATTAGACACGATTGACAAGTCACGGGAAGCTTCTATTCATAGCAGAGATATGGCAGCGACGCAAGAGCGGGAAGCTTCCATGATGAGGCAATGTATTTAG 1392 0.3915 MEMERVFEFPHTYMDRRPRKRARLGWDIPEVPKAQVGLFCGQDVGTISSFAPSRGPSEHTTSSLFVKPVARNGSPPWRDDDKDGHYMFTLGENLTSRYKIHTKMGEGTFGQVLECWDRERKEMVAVKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGKQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSSCSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGSLPQTMMKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLVMQHVDHSAGDLIHLLQGFYGHDSYGILSFVCTSISLHSSVPHTHDILDTIDKSREASIHSRDMAATQEREASMMRQCI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00409 463 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 410 - -
Gma05g00409 463 SUPERFAMILY Protein kinase-like (PK-like) 85 383 IPR011009 -
Gma05g00409 463 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Gma05g00409 463 MobiDBLite consensus disorder prediction 51 68 - -
Gma05g00409 463 MobiDBLite consensus disorder prediction 51 78 - -
Gma05g00409 463 PANTHER KINASE AFC1 1 410 - -
Gma05g00409 463 SMART serkin_6 98 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00409 463 ProSiteProfiles Protein kinase domain profile. 98 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00409 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gma05g00409 463 Pfam Protein kinase domain 98 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00409 463 Gene3D Transferase(Phosphotransferase) domain 1 152 378 - -
Gma05g00409 463 CDD PKc_CLK 85 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00409 Gma-Chr5 3839156 3843879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00409 263 363 EF-hand Containing Proteins AT5G22840 37.391 1.06e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gma05g00409 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00409 K08287 - gmx:100804022 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00409 05 3839156 3843879 Gma05g00409 05 3839156 3843879 ECH
Gma17g01168 17 10196661 10200656 Gma05g00409 05 3839156 3843879 GST