Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00400 ATGGCAATTTCTTGGGCAGCAGCAACAACCTCAAAGCTCGCATACCCTCCTCATGTCCACTTCTCTCCTTCACCCTCCTCCAATTATCTCTTCCTTAAAACCCACAAACCCTCCGCCACACACCTCTCCTCTTCCTTCATCCACCCCACCACAATCCTCCACCTCGCCGCTGCCAACACCACCACCCGCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGTAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAATAGTGCCCCTAAAAAATACGACGAGATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCTGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCCCAAACCAAAGAACACATTCTTTTGGCCAAACAAGTCGGCGTTCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTAGAATTGGAGGTCCGGGAGCTTCTTTCCAAGTACGAGTTCCCCGGAGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTGTCTTTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTCATGGAAGCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTTCACCATCACCGGTCGTGGAACCGTCGCCACCGGAAGGGTTGAGAGAGGTACTATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTGAAGGAGACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCTTTGGCTGGGGACAATGTGGGCTTGTTGCTTAGGGGTATTCAGAAAACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACACCAAGTTTTCTGCAATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGGAGGCACTCTCCCTTCTTTTCCGGCTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGAAATTATGAATGACAAGGATGAAGAGTCCAAGATGGTTATGCCGGGCGACCGTGTTAAGCTGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAG 1440 0.5403 MAISWAAATTSKLAYPPHVHFSPSPSSNYLFLKTHKPSATHLSSSFIHPTTILHLAAANTTTRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSKYEFPGDDVPIISGSALLSLEALMANPAIKRGENQWVDKIYELMEAVDDYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIMNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00400 479 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 80 284 IPR000795 GO:0003924|GO:0005525
Gma05g00400 479 PANTHER ELONGATION FACTOR TU 39 479 - -
Gma05g00400 479 Gene3D Translation factors 286 414 - -
Gma05g00400 479 TIGRFAM EF-Tu: translation elongation factor Tu 72 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gma05g00400 479 CDD EF_Tu 81 283 IPR041709 -
Gma05g00400 479 SUPERFAMILY Translation proteins 285 381 IPR009000 -
Gma05g00400 479 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 121 136 IPR031157 -
Gma05g00400 479 PRINTS GTP-binding elongation factor signature 84 97 IPR000795 GO:0003924|GO:0005525
Gma05g00400 479 PRINTS GTP-binding elongation factor signature 128 136 IPR000795 GO:0003924|GO:0005525
Gma05g00400 479 PRINTS GTP-binding elongation factor signature 148 158 IPR000795 GO:0003924|GO:0005525
Gma05g00400 479 PRINTS GTP-binding elongation factor signature 164 175 IPR000795 GO:0003924|GO:0005525
Gma05g00400 479 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Gma05g00400 479 CDD EFTU_II 291 377 IPR033720 -
Gma05g00400 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 306 IPR027417 -
Gma05g00400 479 TIGRFAM small_GTP: small GTP-binding protein domain 83 216 IPR005225 GO:0005525
Gma05g00400 479 Pfam Elongation factor Tu GTP binding domain 80 281 IPR000795 GO:0003924|GO:0005525
Gma05g00400 479 Pfam Elongation factor Tu domain 2 305 373 IPR004161 GO:0005525
Gma05g00400 479 CDD EFTU_III 380 474 - -
Gma05g00400 479 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 378 478 IPR009001 -
Gma05g00400 479 Pfam Elongation factor Tu C-terminal domain 378 477 IPR004160 -
Gma05g00400 479 Gene3D Translation factors 418 478 - -
Gma05g00400 479 Hamap Elongation factor Tu [tuf]. 71 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gma05g00400 479 PANTHER ELONGATION FACTOR TU-RELATED 39 479 - -
Gma05g00400 479 Gene3D - 72 283 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00400 Gma-Chr5 3763139 3764973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00400 78 477 Eukaryotic Initiation Factors Gene Family AT5G60390 30.337 1.29e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00400 K02358 - gmx:100791320 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00400 05 3763139 3764973 Gma05g00400 05 3763139 3764973 ECH
Gma17g01162 17 10128149 10129970 Gma05g00400 05 3763139 3764973 GST
Gma05g00400 05 3763139 3764973 Gma04g01830 04 48406021 48408115 PCT
Gma05g00400 05 3763139 3764973 Gma06g01579 06 15337159 15338598 PCT
Gma04g01830 04 48406021 48408115 Gma05g00400 05 3763139 3764973 PCT
Gma06g01579 06 15337159 15338598 Gma05g00400 05 3763139 3764973 PCT